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zolfa-nd2reader
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36 Commits (c0f289f4b56e5cf5f38aa2efe30963ef75e321da)

Author SHA1 Message Date
  Ruben Verweij c54d37a606 Fix typo in z-level check 5 years ago
  Gabriele Girelli 5fd18220ef Update raw_metadata.py 5 years ago
  Gabriele Girelli 60dedbe71b Update raw_metadata.py 5 years ago
  Gabriele Girelli 6f27d14339 Update raw_metadata.py 5 years ago
  Gabriele Girelli 96695d50ab Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch 5 years ago
  Ruben Verweij bd09f668a7 Fixes issue #11 5 years ago
  Ruben Verweij 16cb8fb67f Fixes issue #16 5 years ago
  Gregor Lichtner 25d7485868 added event names 6 years ago
  Gregor Lichtner 926f61a8a4 fixed behavior when no events are available 6 years ago
  Gregor Lichtner bf30f9dee1 added image events to parser 6 years ago
  Ruben Verweij c8aef85cd5 Refactor 6 years ago
  Ruben Verweij 1311e2df58 Fix to take into account real acquisition times when calculating framerate instead of the set interval (which is sometimes inaccurate) 6 years ago
  Ruben Verweij 53163826a3 Fix #4 7 years ago
  Ruben Verweij 482d719c3e Refactor CQ 8 years ago
  Ruben Verweij a6760b173e Test color channels, fix a bug in color channel encoding 8 years ago
  Ruben Verweij 6511f7d82a Test legacy Nd2, parser, reader fixes 8 years ago
  Ruben Verweij 1a3a78f34c Add try/except blocks to make code more robust + fix unit tests 8 years ago
  Ruben Verweij 9f3e4c1b35 Extend artificial to also write the label_map + data to file for more extensive unit testing 8 years ago
  Ruben Verweij 09bd870734 Fix small bug when uiCount cannot be found 8 years ago
  Ruben Verweij f5301c039d Add a third method to determine the loop sampling interval 8 years ago
  Ruben Verweij 5f43890053 Also get sampling interval when dAvgPeriodDiff is not set 8 years ago
  Ruben Verweij d4e505779d Issue #2: clean up axes handling, guess a better default axis 8 years ago
  Ruben Verweij 107c05293d Fix the number of frames 8 years ago
  Ruben Verweij b640490de1 Bug fixes by testing different .nd2 files 8 years ago
  Ruben Verweij 1b38242d81 Extend unit tests 8 years ago
  Ruben Verweij a5417099b0 Extend unit tests 8 years ago
  Ruben Verweij 4490d7b830 Code fixes 8 years ago
  Ruben Verweij cb7cb05f74 Add test for Parser 8 years ago
  Ruben Verweij 048e101e2d Cleanup documentation 8 years ago
  Ruben Verweij f3d5c62042 Improve documentation 8 years ago
  Ruben Verweij dab0b4aca8 docstrings 8 years ago
  Ruben Verweij 5f863a3ca5 Cleanup docstrings to use google python docs 8 years ago
  Ruben Verweij 00cc869497 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 8 years ago
  Ruben Verweij 334817cead Fix bug 8 years ago
  Ruben Verweij fa0e0c9a86 Parse part of ND experiment metadata 8 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 8 years ago
  Ruben Verweij 6f151e8701 Reduce code complexity 8 years ago
  Ruben Verweij d0bb78f67a Add ROI type and shape 8 years ago
  Ruben Verweij 6f800c49f6 Added parsing for basic ROI metadata. 8 years ago
  jim 340d74fb8e deleted CameraSettings since it's no longer used 9 years ago
  jim 4194f073dd resolves #150, #149: removed camera settings entirely because they are buggy and terrible 9 years ago
  jim c3d7273dfa resolves #143: we can now programatically access the width of pixels in microns 9 years ago
  jim 9bbbf7ba28 resolves #140 9 years ago
  Jim Rybarski 25c4ce7f78 resolves #135. we're ready to publish version 2.0.0 9 years ago
  jim faa50235d3 moved public methods to the top of classes 9 years ago
  Jim Rybarski aedfa921a5 resolves #117. The XML-formatted strings in a few raw_metadata are now parsed into OrderedDicts. This isn't exposed to the user but if we want to add any of the data it will be more convenient for contributors to examine the contents of the data 9 years ago
  Jim Rybarski 1268b2768c #125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile 9 years ago
  Jim Rybarski 1436068d4c #125: refactored to make adding more metadata easier 9 years ago
  jim 5196c7d2c7 #125 decoded much more metadata and also found pointers to XML data 9 years ago
  jim 4943a854f1 resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing) 9 years ago