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resolves #117. The XML-formatted strings in a few raw_metadata are now parsed into OrderedDicts. This isn't exposed to the user but if we want to add any of the data it will be more convenient for contributors to examine the contents of the data

feature/load_slices
Jim Rybarski 9 years ago
parent
commit
aedfa921a5
2 changed files with 7 additions and 5 deletions
  1. +5
    -4
      nd2reader/parser/v3.py
  2. +2
    -1
      setup.py

+ 5
- 4
nd2reader/parser/v3.py View File

@ -9,6 +9,7 @@ from nd2reader.common.v3 import read_chunk, read_array, read_metadata
import re
import six
import struct
import xmltodict
def ignore_missing(func):
@ -83,22 +84,22 @@ class V3RawMetadata(object):
@property
@ignore_missing
def lut_data(self):
return read_chunk(self._fh, self._label_map.lut_data)
return xmltodict.parse(read_chunk(self._fh, self._label_map.lut_data))
@property
@ignore_missing
def grabber_settings(self):
return read_chunk(self._fh, self._label_map.grabber_settings)
return xmltodict.parse(read_chunk(self._fh, self._label_map.grabber_settings))
@property
@ignore_missing
def custom_data(self):
return read_chunk(self._fh, self._label_map.custom_data)
return xmltodict.parse(read_chunk(self._fh, self._label_map.custom_data))
@property
@ignore_missing
def app_info(self):
return read_chunk(self._fh, self._label_map.app_info)
return xmltodict.parse(read_chunk(self._fh, self._label_map.app_info))
@property
@ignore_missing


+ 2
- 1
setup.py View File

@ -7,7 +7,8 @@ setup(
packages=['nd2reader', 'nd2reader.model', 'nd2reader.driver', 'nd2reader.parser', 'nd2reader.common'],
install_requires=[
'numpy>=1.6.2, <2.0',
'six>=1.4, <2.0'
'six>=1.4, <2.0',
'xmltodict>=0.9.2, <1.0'
],
version=VERSION,
description='A tool for reading ND2 files produced by NIS Elements',


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