Commit Graph
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ffc4d05(HEAD -> master) fix: use https instead of ssh for submodule by 2023-02-14 16:38:32 +0100 -
9a850a7fix: don't track version.py by 2023-02-14 16:38:03 +0100 -
2786c9fprepare hard fork by 2023-01-17 18:02:50 +0100 -
026928aMerge branch 'feature/load_slices' by 2023-01-17 17:05:02 +0100 -
078bba0(upstream/backport/20220103) Update stitched.py by 2022-01-03 11:37:41 -0500 -
80ae990Update README.md by 2021-06-23 21:18:13 +0200 -
7f89b4aDelete .codeclimate.yml by 2021-06-23 21:17:53 +0200 -
b06b629Delete code-climate.yml by 2021-06-23 21:17:44 +0200 -
c0cfed1Rename build script & try to add code climate coverage by 2021-06-23 21:09:16 +0200 -
e05e3f9Remove travis, migrate to github actions by 2021-06-23 21:00:47 +0200 -
e6cc0adUpdate README.md by 2021-06-23 21:00:03 +0200 -
517ee41Update python-package.yml by 2021-06-23 20:56:50 +0200 -
d99cfb3Create python-package.yml by 2021-06-23 20:52:19 +0200 -
794e795Version 3.3.0 by 2021-04-24 15:59:55 +0200 -
ac6c4a3Install package on travis to correctly get version number by 2021-04-24 15:39:36 +0200 -
270e42eTest importlib import on travis by 2021-04-24 15:36:01 +0200 -
ee87f14Test importlib import on travis by 2021-04-24 15:31:49 +0200 -
38a89daUpdate release.txt by 2021-04-23 12:55:09 +0200 -
406e69eUpdate dependencies by 2021-04-23 13:21:40 +0200 -
a58d8d7Fix #42: read version number from setup.py by 2021-04-23 12:53:29 +0200 -
19d2965Fixes issue #50 by 2021-04-23 12:38:42 +0200 -
ffac15e(feature/load_slices) added x coordiantes and rotation matrix readout by 2022-03-21 14:52:34 +0100 -
25ec773Minor changes for dev branched version release by 2021-10-12 22:28:39 +0200 -
f331c8fAdd functions to read only rectangular regions. by 2021-01-25 18:42:45 +0100 -
728a425Merge pull request #43 from ggirelli/ggirelli-filename-patch by 2020-10-27 14:43:26 +0100 -
0acc42eFixed missing filename path. by 2020-10-25 19:05:31 +0100 -
f73cd93Merge pull request #40 from ggirelli/ggirelli-patch-parser-for-stitched-images by 2020-09-14 11:11:22 +0200 -
5a2d9acUpdate stitched.py by 2020-09-02 21:14:24 +0200 -
c0abe63Merge pull request #39 from ggirelli/ggirelli-patch-nd2reader-from-file by 2020-09-02 14:23:49 +0200 -
e029f3cFixed func def by 2020-08-31 11:58:49 +0200 -
165b809Refactored. by 2020-08-31 11:55:15 +0200 -
6a4ffcdAdded get_image test of stitched sample by 2020-08-31 11:41:41 +0200 -
7cee1a7Using numpy assets when possible, and formatted with black by 2020-08-31 11:41:29 +0200 -
2cd3663Switched from warning to raising exception and improved message by 2020-08-31 10:55:51 +0200 -
e969424Improved assert and warning messages by 2020-08-31 10:45:55 +0200 -
fdc10caFixed new init method by 2020-08-31 10:40:59 +0200 -
481ce67Implemented test. by 2020-08-31 10:40:47 +0200 -
0b8ae27Allowed for fh to be either str or IO, and formatted with black. by 2020-08-31 10:32:38 +0200 -
1dd4827Changed structure to check/remove method pair by 2020-08-15 12:19:07 +0200 -
ee4b5adAllowing case of multiple unwanted bytes per step by 2020-08-15 12:14:42 +0200 -
5763229Complexity by 2020-08-15 12:12:47 +0200 -
62c86f3Update parser.py by 2020-08-15 12:07:27 +0200 -
e5d4eebComplexity by 2020-08-15 12:01:48 +0200 -
460583bFixed complexity by 2020-08-15 11:58:57 +0200 -
b84b52dRegenerated Reader by 2020-08-15 11:58:10 +0200 -
77016ccFixed complexity by 2020-08-15 11:56:38 +0200 -
9b0b4b1Removed empty bytes at channel subchunk ends by 2020-08-15 11:52:03 +0200 -
ce29f90Update reader.py by 2020-08-13 19:51:26 +0200 -
a238516update Travis settings by 2020-05-04 16:46:30 +0200 -
d0e4abcFix issue #34 by 2020-05-04 16:33:45 +0200 -
b496774Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate by 2020-04-21 13:56:16 +0200 -
0a16ce9Fix error in loop handling by 2020-03-18 21:27:13 +0100 -
c0f289fMerge pull request #32 from ulugbekna/handle-invalid-file-extension by 2020-02-23 17:46:45 +0100 -
a051a70Merge pull request #1 from ggirelli/patch-1 by 2020-02-18 20:42:29 +0100 -
2508beff-strings not supported by Python3.6- by 2020-02-17 17:28:39 +0100 -
c54d37aFix typo in z-level check by 2020-01-24 14:39:00 +0100 -
1fc0389add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading by 2019-12-07 23:55:31 +0100 -
c038c5bMerge pull request #33 from ggirelli/master by 2020-01-20 15:39:49 +0100 -
17606e0Fix codeclimate integration by 2020-01-20 15:34:49 +0100 -
ffef793Update README.md by 2020-01-20 15:27:45 +0100 -
7c636acRemove support for Python < 3.5 by 2020-01-20 15:26:15 +0100 -
e011b57Removed self.__class__ from super() call by 2020-01-20 13:47:19 +0100 -
58d60ebVersion 3.2.3 due to build error of new version number storage system by 2020-01-06 11:15:55 +0100 -
9297cc8Merge branch 'master' of github.com:rbnvrw/nd2reader by 2020-01-06 10:54:50 +0100 -
a92617aNew version 3.2.2 by 2020-01-06 10:54:44 +0100 -
b868fcaUpdate release.txt by 2020-01-06 10:47:08 +0100 -
6636133Merge pull request #30 from rbnvrw/add-code-of-conduct-1 by 2019-11-01 12:43:45 +0100 -
0d87fe3Create CODE_OF_CONDUCT.md by 2019-11-01 12:43:30 +0100 -
61d6f99Merge pull request #28 from ggirelli/master by 2019-11-01 12:40:44 +0100 -
5fd1822Update raw_metadata.py by 2019-11-01 11:40:40 +0100 -
60dedbeUpdate raw_metadata.py by 2019-11-01 10:13:59 +0100 -
6f27d14Update raw_metadata.py by 2019-10-31 16:09:29 +0100 -
96695d5Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch by 2019-10-30 12:29:03 +0100 -
0fd78a4Resolve issue #24 by 2019-10-17 09:01:09 +0200 -
9b205caIssue #24: only return a Frame when bundle_axes is only y,x by 2019-10-16 14:56:43 +0200 -
c6a184eMerge branch 'master' of github.com:rbnvrw/nd2reader by 2019-10-16 14:42:01 +0200 -
8b2f506Update get_frame_vczyx function based on feedback in issue #24 by 2019-10-16 14:41:52 +0200 -
84caa2bUpdate release.txt by 2019-10-15 09:58:29 +0200 -
20dd8e0Make unit test less specific to accomodate for different versions of struct by 2019-10-15 09:47:56 +0200 -
d98e7acFixes issue #25, adds unit tests and release 3.2.1 by 2019-10-15 09:44:32 +0200 -
afa38eaFixes issue 25 by 2019-10-09 12:32:48 +0200 -
c5e2934Merge branch 'master' of github.com:rbnvrw/nd2reader by 2019-09-26 17:21:42 +0200 -
010073dFix issue with bundle_axes and get_frame by 2019-09-26 17:21:36 +0200 -
8d08175Update release.txt by 2019-09-26 10:55:52 +0200 -
14fb182Update version 3.2.0 by 2019-09-26 10:42:55 +0200 -
c9a1e13Merge branch 'master' of github.com:rbnvrw/nd2reader by 2019-09-26 10:41:08 +0200 -
da02385Version 3.2.0 by 2019-09-26 10:41:00 +0200 -
e182d2eMerge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master by 2019-09-26 10:08:11 +0200 -
54fd725More informative warning if gap frames encountered and filled with np.nan by 2019-09-25 15:05:46 -0400 -
5d8fd31Handle gap frames with np.nan-filled array and issue warning about it. by 2019-09-24 13:49:57 -0400 -
6649d57removed NoImageError call, class def, and import references since now redundant by 2019-09-20 14:03:30 -0400 -
94fa888Add acquisition times to parser by 2019-09-19 11:48:31 +0200 -
bd09f66Fixes issue #11 by 2019-09-19 10:09:18 +0200 -
16cb8fbFixes issue #16 by 2019-09-19 09:40:17 +0200 -
b6aa323Fallback function for old get_frame_2D function by 2019-09-19 09:23:48 +0200 -
52e52b3fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master by 2019-09-10 17:53:25 -0400 -
8f8a3afUse _register_get_frame functions by 2019-05-27 17:41:09 +0200 -
eb81db8Merge pull request #21 from glichtner/image-events by 2019-05-27 13:59:20 +0200 -
4b6a462Merge pull request #20 from glichtner/valid-loops by 2019-05-27 13:57:52 +0200 -
25d7485added event names by 2019-05-24 14:10:16 +0200