Ruben Verweij
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c0abe63fe9
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Merge pull request #39 from ggirelli/ggirelli-patch-nd2reader-from-file
Update to reader.py for issue #35
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4 years ago |
Gabriele Girelli
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fdc10ca56e
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Fixed new init method
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4 years ago |
Gabriele Girelli
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481ce67e34
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Implemented test.
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4 years ago |
Gabriele Girelli
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0b8ae27dde
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Allowed for fh to be either str or IO, and formatted with black.
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4 years ago |
Gabriele Girelli
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ce29f90f20
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Update reader.py
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4 years ago |
Ruben Verweij
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a2385164a1
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update Travis settings
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5 years ago |
Ruben Verweij
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d0e4abcf55
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Fix issue #34
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5 years ago |
Ruben Verweij
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b496774361
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Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
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5 years ago |
Ruben Verweij
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0a16ce9003
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Fix error in loop handling
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5 years ago |
Ruben Verweij
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c0f289f4b5
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Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
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5 years ago |
Ulugbek Abdullaev
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a051a70350
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Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
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5 years ago |
Gabriele Girelli
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2508bef3e0
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f-strings not supported by Python3.6-
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5 years ago |
Ruben Verweij
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c54d37a606
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Fix typo in z-level check
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5 years ago |
Ulugbek Abdullaev
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1fc0389059
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add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
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5 years ago |
Ruben Verweij
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c038c5b24d
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Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
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5 years ago |
Ruben Verweij
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17606e0a47
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Fix codeclimate integration
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5 years ago |
Ruben Verweij
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ffef793c83
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Update README.md
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5 years ago |
Ruben Verweij
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7c636ac002
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Remove support for Python < 3.5
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5 years ago |
Gabriele Girelli
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e011b578e6
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Removed self.__class__ from super() call
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5 years ago |
Ruben Verweij
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58d60ebf88
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Version 3.2.3 due to build error of new version number storage system
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5 years ago |
Ruben Verweij
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9297cc86da
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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a92617a567
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New version 3.2.2
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5 years ago |
Ruben Verweij
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b868fcabc6
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Update release.txt
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5 years ago |
Ruben Verweij
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66361332cd
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Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
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5 years ago |
Ruben Verweij
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0d87fe32bc
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Create CODE_OF_CONDUCT.md
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5 years ago |
Ruben Verweij
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61d6f99548
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Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
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5 years ago |
Gabriele Girelli
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5fd18220ef
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Update raw_metadata.py
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5 years ago |
Gabriele Girelli
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60dedbe71b
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Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
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5 years ago |
Gabriele Girelli
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6f27d14339
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Update raw_metadata.py
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5 years ago |
Gabriele Girelli
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96695d50ab
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Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
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5 years ago |
Ruben Verweij
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0fd78a4175
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Resolve issue #24
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5 years ago |
Ruben Verweij
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9b205ca1da
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Issue #24: only return a Frame when bundle_axes is only y,x
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5 years ago |
Ruben Verweij
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c6a184ec2e
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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8b2f506990
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Update get_frame_vczyx function based on feedback in issue #24
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5 years ago |
Ruben Verweij
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84caa2b52c
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Update release.txt
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5 years ago |
Ruben Verweij
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20dd8e0d2a
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Make unit test less specific to accomodate for different versions of struct
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5 years ago |
Ruben Verweij
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d98e7acb71
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Fixes issue #25, adds unit tests and release 3.2.1
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5 years ago |
Ruben Verweij
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afa38ea0e7
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Fixes issue 25
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5 years ago |
Ruben Verweij
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c5e293463a
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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010073d24c
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Fix issue with bundle_axes and get_frame
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5 years ago |
Ruben Verweij
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8d081751f1
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Update release.txt
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5 years ago |
Ruben Verweij
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14fb182e33
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Update version 3.2.0
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5 years ago |
Ruben Verweij
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c9a1e13936
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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da0238577c
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Version 3.2.0
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5 years ago |
Ruben Verweij
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e182d2e73a
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Merge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master
Fix to allow reading of ND2-files with missing frames.
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5 years ago |
unknown
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54fd7253b6
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More informative warning if gap frames encountered and filled with np.nan
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5 years ago |
unknown
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5d8fd312bc
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Handle gap frames with np.nan-filled array and issue warning about it.
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5 years ago |
unknown
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6649d577a8
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removed NoImageError call, class def, and import references since now redundant
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5 years ago |
Ruben Verweij
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94fa888c09
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Add acquisition times to parser
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5 years ago |
Ruben Verweij
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bd09f668a7
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Fixes issue #11
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5 years ago |