Gabriele Girelli
b84b52d93d
Regenerated Reader
4 years ago
Gabriele Girelli
77016ccbaf
Fixed complexity
4 years ago
Gabriele Girelli
9b0b4b137a
Removed empty bytes at channel subchunk ends
Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).
4 years ago
Ruben Verweij
a2385164a1
update Travis settings
5 years ago
Ruben Verweij
d0e4abcf55
Fix issue #34
5 years ago
Ruben Verweij
b496774361
Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
5 years ago
Ruben Verweij
0a16ce9003
Fix error in loop handling
5 years ago
Ruben Verweij
c0f289f4b5
Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
5 years ago
Ulugbek Abdullaev
a051a70350
Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
5 years ago
Gabriele Girelli
2508bef3e0
f-strings not supported by Python3.6-
5 years ago
Ruben Verweij
c54d37a606
Fix typo in z-level check
5 years ago
Ulugbek Abdullaev
1fc0389059
add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
5 years ago
Ruben Verweij
c038c5b24d
Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
17606e0a47
Fix codeclimate integration
5 years ago
Ruben Verweij
ffef793c83
Update README.md
5 years ago
Ruben Verweij
7c636ac002
Remove support for Python < 3.5
5 years ago
Gabriele Girelli
e011b578e6
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
58d60ebf88
Version 3.2.3 due to build error of new version number storage system
5 years ago
Ruben Verweij
9297cc86da
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
a92617a567
New version 3.2.2
5 years ago
Ruben Verweij
b868fcabc6
Update release.txt
5 years ago
Ruben Verweij
66361332cd
Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
0d87fe32bc
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
61d6f99548
Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Gabriele Girelli
5fd18220ef
Update raw_metadata.py
5 years ago
Gabriele Girelli
60dedbe71b
Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
5 years ago
Gabriele Girelli
6f27d14339
Update raw_metadata.py
5 years ago
Gabriele Girelli
96695d50ab
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Ruben Verweij
0fd78a4175
Resolve issue #24
5 years ago
Ruben Verweij
9b205ca1da
Issue #24 : only return a Frame when bundle_axes is only y,x
5 years ago
Ruben Verweij
c6a184ec2e
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
8b2f506990
Update get_frame_vczyx function based on feedback in issue #24
5 years ago
Ruben Verweij
84caa2b52c
Update release.txt
5 years ago
Ruben Verweij
20dd8e0d2a
Make unit test less specific to accomodate for different versions of struct
5 years ago
Ruben Verweij
d98e7acb71
Fixes issue #25 , adds unit tests and release 3.2.1
5 years ago
Ruben Verweij
afa38ea0e7
Fixes issue 25
5 years ago
Ruben Verweij
c5e293463a
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
010073d24c
Fix issue with bundle_axes and get_frame
5 years ago
Ruben Verweij
8d081751f1
Update release.txt
5 years ago
Ruben Verweij
14fb182e33
Update version 3.2.0
5 years ago
Ruben Verweij
c9a1e13936
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
da0238577c
Version 3.2.0
5 years ago
Ruben Verweij
e182d2e73a
Merge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master
Fix to allow reading of ND2-files with missing frames.
5 years ago
unknown
54fd7253b6
More informative warning if gap frames encountered and filled with np.nan
5 years ago
unknown
5d8fd312bc
Handle gap frames with np.nan-filled array and issue warning about it.
5 years ago
unknown
6649d577a8
removed NoImageError call, class def, and import references since now redundant
5 years ago
Ruben Verweij
94fa888c09
Add acquisition times to parser
5 years ago
Ruben Verweij
bd09f668a7
Fixes issue #11
5 years ago
Ruben Verweij
16cb8fb67f
Fixes issue #16
5 years ago
Ruben Verweij
b6aa323420
Fallback function for old get_frame_2D function
5 years ago