Ruben Verweij
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b640490de1
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Bug fixes by testing different .nd2 files
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8 years ago |
Ruben Verweij
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1b38242d81
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Extend unit tests
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8 years ago |
Ruben Verweij
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a5417099b0
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Extend unit tests
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8 years ago |
Ruben Verweij
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4490d7b830
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Code fixes
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8 years ago |
Ruben Verweij
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cb7cb05f74
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Add test for Parser
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8 years ago |
Ruben Verweij
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048e101e2d
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Cleanup documentation
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8 years ago |
Ruben Verweij
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f3d5c62042
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Improve documentation
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8 years ago |
Ruben Verweij
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dab0b4aca8
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docstrings
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8 years ago |
Ruben Verweij
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5f863a3ca5
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Cleanup docstrings to use google python docs
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8 years ago |
Ruben Verweij
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00cc869497
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Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader
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8 years ago |
Ruben Verweij
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334817cead
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Fix bug
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8 years ago |
Ruben Verweij
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fa0e0c9a86
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Parse part of ND experiment metadata
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8 years ago |
Ruben Verweij
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cb2c06f9a5
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Complete refactor
- use only one parser for v3 files
- merge some classes
- return metadata as raw metadata and dictionary
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8 years ago |
Ruben Verweij
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6f151e8701
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Reduce code complexity
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8 years ago |
Ruben Verweij
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d0bb78f67a
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Add ROI type and shape
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8 years ago |
Ruben Verweij
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6f800c49f6
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Added parsing for basic ROI metadata.
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8 years ago |
jim
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340d74fb8e
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deleted CameraSettings since it's no longer used
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9 years ago |
jim
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4194f073dd
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resolves #150, #149: removed camera settings entirely because they are buggy and terrible
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9 years ago |
jim
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c3d7273dfa
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resolves #143: we can now programatically access the width of pixels in microns
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9 years ago |
jim
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9bbbf7ba28
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resolves #140
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9 years ago |
Jim Rybarski
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25c4ce7f78
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resolves #135. we're ready to publish version 2.0.0
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9 years ago |
jim
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faa50235d3
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moved public methods to the top of classes
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9 years ago |
Jim Rybarski
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aedfa921a5
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resolves #117. The XML-formatted strings in a few raw_metadata are now parsed into OrderedDicts. This isn't exposed to the user but if we want to add any of the data it will be more convenient for contributors to examine the contents of the data
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9 years ago |
Jim Rybarski
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1268b2768c
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#125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile
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9 years ago |
Jim Rybarski
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1436068d4c
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#125: refactored to make adding more metadata easier
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9 years ago |
jim
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5196c7d2c7
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#125 decoded much more metadata and also found pointers to XML data
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9 years ago |
jim
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4943a854f1
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resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing)
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9 years ago |
jim
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e9ff0915bf
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#123 switched to the new LabelMap object, added support for another metadata field
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9 years ago |
jim
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9548b92957
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#123: created label map object, which parses the pointers to locations in the file where data is stored
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9 years ago |
jim
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09173fcb9e
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resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening
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9 years ago |
Jim Rybarski
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284f6775de
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resolves #103: ND2s with a single image could not be parsed properly as they do not contain any dimension data, so when absent we can assume a single frame exists
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9 years ago |
jim
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c3a3cbadd4
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resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr
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9 years ago |
Jim Rybarski
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2b2ad95a82
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fixed syntax errors
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9 years ago |
Jim Rybarski
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ac91d388c1
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cleaned up a bit
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9 years ago |
jim
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e55029c1de
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resolves #90
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9 years ago |
jim
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89d78030f1
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#66 resolves v3 driver refactor
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9 years ago |
jim
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4ec54183d1
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#66 fixed import problems
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9 years ago |
jim
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12512a5a1a
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#66 lol
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9 years ago |
jim
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544fd974eb
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#66 more refactoring
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9 years ago |