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zolfa-nd2reader
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24 Commits (53163826a3f93909e7f2b9ce765e99aaa9cdd15e)

Author SHA1 Message Date
  Ruben Verweij 53163826a3 Fix #4 7 years ago
  Ruben Verweij 482d719c3e Refactor CQ 7 years ago
  Ruben Verweij a6760b173e Test color channels, fix a bug in color channel encoding 7 years ago
  Ruben Verweij 6511f7d82a Test legacy Nd2, parser, reader fixes 7 years ago
  Ruben Verweij 1a3a78f34c Add try/except blocks to make code more robust + fix unit tests 7 years ago
  Ruben Verweij 9f3e4c1b35 Extend artificial to also write the label_map + data to file for more extensive unit testing 7 years ago
  Ruben Verweij 09bd870734 Fix small bug when uiCount cannot be found 7 years ago
  Ruben Verweij f5301c039d Add a third method to determine the loop sampling interval 7 years ago
  Ruben Verweij 5f43890053 Also get sampling interval when dAvgPeriodDiff is not set 7 years ago
  Ruben Verweij d4e505779d Issue #2: clean up axes handling, guess a better default axis 7 years ago
  Ruben Verweij 107c05293d Fix the number of frames 7 years ago
  Ruben Verweij b640490de1 Bug fixes by testing different .nd2 files 7 years ago
  Ruben Verweij 1b38242d81 Extend unit tests 7 years ago
  Ruben Verweij a5417099b0 Extend unit tests 7 years ago
  Ruben Verweij 4490d7b830 Code fixes 7 years ago
  Ruben Verweij cb7cb05f74 Add test for Parser 7 years ago
  Ruben Verweij 048e101e2d Cleanup documentation 7 years ago
  Ruben Verweij f3d5c62042 Improve documentation 7 years ago
  Ruben Verweij dab0b4aca8 docstrings 7 years ago
  Ruben Verweij 5f863a3ca5 Cleanup docstrings to use google python docs 7 years ago
  Ruben Verweij 00cc869497 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 7 years ago
  Ruben Verweij 334817cead Fix bug 7 years ago
  Ruben Verweij fa0e0c9a86 Parse part of ND experiment metadata 7 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 7 years ago
  Ruben Verweij 6f151e8701 Reduce code complexity 7 years ago
  Ruben Verweij d0bb78f67a Add ROI type and shape 7 years ago
  Ruben Verweij 6f800c49f6 Added parsing for basic ROI metadata. 7 years ago
  jim 340d74fb8e deleted CameraSettings since it's no longer used 8 years ago
  jim 4194f073dd resolves #150, #149: removed camera settings entirely because they are buggy and terrible 8 years ago
  jim c3d7273dfa resolves #143: we can now programatically access the width of pixels in microns 9 years ago
  jim 9bbbf7ba28 resolves #140 9 years ago
  Jim Rybarski 25c4ce7f78 resolves #135. we're ready to publish version 2.0.0 9 years ago
  jim faa50235d3 moved public methods to the top of classes 9 years ago
  Jim Rybarski aedfa921a5 resolves #117. The XML-formatted strings in a few raw_metadata are now parsed into OrderedDicts. This isn't exposed to the user but if we want to add any of the data it will be more convenient for contributors to examine the contents of the data 9 years ago
  Jim Rybarski 1268b2768c #125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile 9 years ago
  Jim Rybarski 1436068d4c #125: refactored to make adding more metadata easier 9 years ago
  jim 5196c7d2c7 #125 decoded much more metadata and also found pointers to XML data 9 years ago
  jim 4943a854f1 resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing) 9 years ago
  jim e9ff0915bf #123 switched to the new LabelMap object, added support for another metadata field 9 years ago
  jim 9548b92957 #123: created label map object, which parses the pointers to locations in the file where data is stored 9 years ago
  jim 09173fcb9e resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening 9 years ago
  Jim Rybarski 284f6775de resolves #103: ND2s with a single image could not be parsed properly as they do not contain any dimension data, so when absent we can assume a single frame exists 9 years ago
  jim c3a3cbadd4 resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr 9 years ago
  Jim Rybarski 2b2ad95a82 fixed syntax errors 9 years ago
  Jim Rybarski ac91d388c1 cleaned up a bit 9 years ago
  jim e55029c1de resolves #90 9 years ago
  jim 89d78030f1 #66 resolves v3 driver refactor 9 years ago
  jim 4ec54183d1 #66 fixed import problems 9 years ago
  jim 12512a5a1a #66 lol 9 years ago
  jim 544fd974eb #66 more refactoring 9 years ago