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zolfa-nd2reader
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453 Commits
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204 MiB
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223 Commits (52e52b361642b1c1b89ce26f9b0e142c9b014fca)

Author SHA1 Message Date
  unknown 52e52b3616 fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master 5 years ago
  Ruben Verweij 8f8a3aff1e Use _register_get_frame functions 6 years ago
  Gregor Lichtner 25d7485868 added event names 6 years ago
  Gregor Lichtner 926f61a8a4 fixed behavior when no events are available 6 years ago
  Gregor Lichtner bf30f9dee1 added image events to parser 6 years ago
  Gregor Lichtner 2881b0f3b1 include only valid loops in experiment metadata 6 years ago
  jbf81tb 1fe728a52c get_frame_2D fix 6 years ago
  Ruben Verweij 97846ac6b1 Fix fps calculation 6 years ago
  Ruben Verweij 29fcb53a9c Version 3.1.0 6 years ago
  Ruben Verweij 7b15150b64 Fix error 6 years ago
  Ruben Verweij b7cbd58d9b Fix formatting error 6 years ago
  Ruben Verweij c8aef85cd5 Refactor 6 years ago
  Ruben Verweij c56da21d09 Refactor 6 years ago
  Ruben Verweij c57aff43d7 Refactor 6 years ago
  Ruben Verweij d656da42c4 Refactor 6 years ago
  Ruben Verweij 8e417fe2b2 Workaround issue #6, fix unit test timesteps 6 years ago
  Ruben Verweij 1311e2df58 Fix to take into account real acquisition times when calculating framerate instead of the set interval (which is sometimes inaccurate) 6 years ago
  Ruben Verweij 1607a24ba1 3.0.9 7 years ago
  Ruben Verweij c02dd5f350 Fix version number 7 years ago
  Ruben Verweij 25e4bafd99 New release 7 years ago
  Ruben Verweij e9ffd4ba98 Version 3.0.7 7 years ago
  Ruben Verweij 53163826a3 Fix #4 7 years ago
  Ruben Verweij fbdb5a8a55 Version 3.0.6: Add FOV support 7 years ago
  Ruben Verweij 31868d2765 Add additional date formats for parsing raw metadata 7 years ago
  Ruben Verweij 847f1f3517 Version 3.0.5 7 years ago
  Ruben Verweij 482d719c3e Refactor CQ 8 years ago
  Ruben Verweij a6760b173e Test color channels, fix a bug in color channel encoding 8 years ago
  Ruben Verweij 6511f7d82a Test legacy Nd2, parser, reader fixes 8 years ago
  Ruben Verweij 0187996815 Extend unit tests 8 years ago
  Ruben Verweij 6bd8ac2bd2 Extend unit tests, remove badge 8 years ago
  Ruben Verweij 25275d2fd6 Remove unused lines from artificial 8 years ago
  Ruben Verweij e840e11c36 Fix bytes compatibility for Python 2 8 years ago
  Ruben Verweij 34191adb61 Unit testing: test the correct parsing of image_attributes 8 years ago
  Ruben Verweij 589345ebac Add a class priority so this reader will be loaded before the Bioformats reader 8 years ago
  Ruben Verweij 1a3a78f34c Add try/except blocks to make code more robust + fix unit tests 8 years ago
  Ruben Verweij 9f3e4c1b35 Extend artificial to also write the label_map + data to file for more extensive unit testing 8 years ago
  Ruben Verweij 6128ba4838 Fix imports of pims and release 3.0.4 8 years ago
  Ruben Verweij 09bd870734 Fix small bug when uiCount cannot be found 8 years ago
  Ruben Verweij e7555f87de Version 3.0.3 8 years ago
  Ruben Verweij f5301c039d Add a third method to determine the loop sampling interval 8 years ago
  Ruben Verweij cbdec0fdc9 Cache timesteps and add frame rate property 8 years ago
  Ruben Verweij 9f96d23988 Always set 't' axis 8 years ago
  Ruben Verweij 5f43890053 Also get sampling interval when dAvgPeriodDiff is not set 8 years ago
  Ruben Verweij 9c957a1d0a Only setup certain axes if size > 1 8 years ago
  Ruben Verweij 30457e5931 Update version 3.0.2 8 years ago
  Ruben Verweij df7913e6b3 Issue #2: fix calculation of image group number when there is no z-axis 8 years ago
  Ruben Verweij d4e505779d Issue #2: clean up axes handling, guess a better default axis 8 years ago
  Ruben Verweij 80a6e51a77 Fix issue #2 by following PIMS conventions more closely 8 years ago
  Ruben Verweij 45674ff241 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention 8 years ago
  Ruben Verweij 0bd5bdc0fd version 3.0.1: Include LICENSE via MANIFEST.in for conda forge 8 years ago