|
|
@ -6,6 +6,27 @@ import struct |
|
|
|
from nd2reader.common import check_or_make_dir |
|
|
|
from os import path |
|
|
|
|
|
|
|
global_labels = ['image_attributes', 'image_text_info', 'image_metadata', |
|
|
|
'image_metadata_sequence', 'image_calibration', 'x_data', |
|
|
|
'y_data', 'z_data', 'roi_metadata', 'pfs_status', 'pfs_offset', |
|
|
|
'guid', 'description', 'camera_exposure_time', 'camera_temp', |
|
|
|
'acquisition_times', 'acquisition_times_2', |
|
|
|
'acquisition_frames', 'lut_data', 'grabber_settings', |
|
|
|
'custom_data', 'app_info', 'image_frame_0'] |
|
|
|
|
|
|
|
global_file_labels = ["ImageAttributesLV!", "ImageTextInfoLV!", |
|
|
|
"ImageMetadataLV!", "ImageMetadataSeqLV|0!", |
|
|
|
"ImageCalibrationLV|0!", "CustomData|X!", "CustomData|Y!", |
|
|
|
"CustomData|Z!", "CustomData|RoiMetadata_v1!", |
|
|
|
"CustomData|PFS_STATUS!", "CustomData|PFS_OFFSET!", |
|
|
|
"CustomData|GUIDStore!", "CustomData|CustomDescriptionV1_0!", |
|
|
|
"CustomData|Camera_ExposureTime1!", "CustomData|CameraTemp1!", |
|
|
|
"CustomData|AcqTimesCache!", "CustomData|AcqTimes2Cache!", |
|
|
|
"CustomData|AcqFramesCache!", "CustomDataVar|LUTDataV1_0!", |
|
|
|
"CustomDataVar|GrabberCameraSettingsV1_0!", |
|
|
|
"CustomDataVar|CustomDataV2_0!", "CustomDataVar|AppInfo_V1_0!", |
|
|
|
"ImageDataSeq|0!"] |
|
|
|
|
|
|
|
|
|
|
|
class ArtificialND2(object): |
|
|
|
"""Artificial ND2 class (for testing purposes) |
|
|
@ -97,58 +118,6 @@ class ArtificialND2(object): |
|
|
|
|
|
|
|
return locations, data |
|
|
|
|
|
|
|
@staticmethod |
|
|
|
def _get_labels(): |
|
|
|
return ['image_attributes', |
|
|
|
'image_text_info', |
|
|
|
'image_metadata', |
|
|
|
'image_metadata_sequence', |
|
|
|
'image_calibration', |
|
|
|
'x_data', |
|
|
|
'y_data', |
|
|
|
'z_data', |
|
|
|
'roi_metadata', |
|
|
|
'pfs_status', |
|
|
|
'pfs_offset', |
|
|
|
'guid', |
|
|
|
'description', |
|
|
|
'camera_exposure_time', |
|
|
|
'camera_temp', |
|
|
|
'acquisition_times', |
|
|
|
'acquisition_times_2', |
|
|
|
'acquisition_frames', |
|
|
|
'lut_data', |
|
|
|
'grabber_settings', |
|
|
|
'custom_data', |
|
|
|
'app_info', |
|
|
|
'image_frame_0'] |
|
|
|
|
|
|
|
@staticmethod |
|
|
|
def _get_file_labels(): |
|
|
|
return ["ImageAttributesLV!", |
|
|
|
"ImageTextInfoLV!", |
|
|
|
"ImageMetadataLV!", |
|
|
|
"ImageMetadataSeqLV|0!", |
|
|
|
"ImageCalibrationLV|0!", |
|
|
|
"CustomData|X!", |
|
|
|
"CustomData|Y!", |
|
|
|
"CustomData|Z!", |
|
|
|
"CustomData|RoiMetadata_v1!", |
|
|
|
"CustomData|PFS_STATUS!", |
|
|
|
"CustomData|PFS_OFFSET!", |
|
|
|
"CustomData|GUIDStore!", |
|
|
|
"CustomData|CustomDescriptionV1_0!", |
|
|
|
"CustomData|Camera_ExposureTime1!", |
|
|
|
"CustomData|CameraTemp1!", |
|
|
|
"CustomData|AcqTimesCache!", |
|
|
|
"CustomData|AcqTimes2Cache!", |
|
|
|
"CustomData|AcqFramesCache!", |
|
|
|
"CustomDataVar|LUTDataV1_0!", |
|
|
|
"CustomDataVar|GrabberCameraSettingsV1_0!", |
|
|
|
"CustomDataVar|CustomDataV2_0!", |
|
|
|
"CustomDataVar|AppInfo_V1_0!", |
|
|
|
"ImageDataSeq|0!"] |
|
|
|
|
|
|
|
def create_label_map_bytes(self): |
|
|
|
"""Construct a binary label map |
|
|
|
|
|
|
@ -157,8 +126,8 @@ class ArtificialND2(object): |
|
|
|
|
|
|
|
""" |
|
|
|
raw_text = six.b('') |
|
|
|
labels = self._get_labels() |
|
|
|
file_labels = self._get_file_labels() |
|
|
|
labels = global_labels |
|
|
|
file_labels = global_file_labels |
|
|
|
|
|
|
|
file_data, file_data_dict = self._get_file_data(labels) |
|
|
|
|
|
|
|