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zolfa-nd2reader
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204 MiB
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173 Commits (45674ff241a6f71d35f6a89d3367dde27d06a208)

Author SHA1 Message Date
  Ruben Verweij 45674ff241 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention 8 years ago
  Ruben Verweij 0bd5bdc0fd version 3.0.1: Include LICENSE via MANIFEST.in for conda forge 8 years ago
  Ruben Verweij 107c05293d Fix the number of frames 8 years ago
  Ruben Verweij da38f7cd66 Add more unit test for common + fix possibly endless loop 8 years ago
  Ruben Verweij 3590a7ec6b Fix creating test file for unit tests 8 years ago
  Ruben Verweij b640490de1 Bug fixes by testing different .nd2 files 8 years ago
  Ruben Verweij 480e231d17 Bump version number to reflect api changes 8 years ago
  Ruben Verweij 1b38242d81 Extend unit tests 8 years ago
  Ruben Verweij a5417099b0 Extend unit tests 8 years ago
  Ruben Verweij 5251464df5 Extend unit tests 8 years ago
  Ruben Verweij cfd6b93cca New documentation 8 years ago
  Ruben Verweij b0f22eb83b Very basic Reader test 8 years ago
  Ruben Verweij d2255ee123 Last test of LabelMap 8 years ago
  Ruben Verweij 4490d7b830 Code fixes 8 years ago
  Ruben Verweij 19c5db83af Test the LabelMap 8 years ago
  Ruben Verweij cb7cb05f74 Add test for Parser 8 years ago
  Ruben Verweij eb12a4cfd4 Add ArtificialND2 class to help in testing nd2 file reading and parsing 8 years ago
  Ruben Verweij 6d1fd6d243 Provide backwards compatibility with old 2.1.3 version 8 years ago
  Ruben Verweij 048e101e2d Cleanup documentation 8 years ago
  Ruben Verweij f3d5c62042 Improve documentation 8 years ago
  Ruben Verweij dab0b4aca8 docstrings 8 years ago
  Ruben Verweij 5f863a3ca5 Cleanup docstrings to use google python docs 8 years ago
  Ruben Verweij 00cc869497 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 8 years ago
  Ruben Verweij c2e48e36db Add ability to bundle the color axis 8 years ago
  Ruben Verweij 3b07b58d01 Add ability to bundle the color axis 8 years ago
  Ruben Verweij 334817cead Fix bug 8 years ago
  Ruben Verweij bd10811aee Add unit tests for opening files and axis sizes 8 years ago
  Ruben Verweij fa0e0c9a86 Parse part of ND experiment metadata 8 years ago
  Ruben Verweij a56a7cc665 Fix dtype at np.float64 8 years ago
  Ruben Verweij a716471131 Small fixes 8 years ago
  Ruben Verweij 63a286d167 Hopefully fix Python 2 import error 8 years ago
  Ruben Verweij 685afb16ab Rename exceptions 8 years ago
  Ruben Verweij 7c779b3a40 Small refactor of common functions 8 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 8 years ago
  Ruben Verweij 6f151e8701 Reduce code complexity 8 years ago
  Ruben Verweij d19a9c305b Refactor, add metadata to Frame objects, support PIMS open function 8 years ago
  Ruben Verweij 7b7bf1ac25 Start porting to PIMS framework, cleanup unnecessary files 8 years ago
  Ruben Verweij 4ffc0bdf85 Correctly scale ROI sizes and position 8 years ago
  Ruben Verweij d0bb78f67a Add ROI type and shape 8 years ago
  Ruben Verweij 6f800c49f6 Added parsing for basic ROI metadata. 8 years ago
  jim 340d74fb8e deleted CameraSettings since it's no longer used 9 years ago
  Jim Rybarski b80ed8c75b possible fix for weird problem resulting from having many exposure times 9 years ago
  jim 4a48847630 resolves #152: images truly act like numpy arrays now and are also displayable 9 years ago
  jim 4194f073dd resolves #150, #149: removed camera settings entirely because they are buggy and terrible 9 years ago
  jim 19c45ed952 Version 2.1.1 9 years ago
  jim a1d73157b4 #147: this mostly resolves the issue and I'm going to close it out with this patch, however, I'm not satisfied with the solution (taken from http://stackoverflow.com/questions/16805987/python-numpy-ndarray-subclasses-and-zero-rank-arrays). While this allows most numpy operations to work, you still can't do basic things like adding two Image objects (even though np.sum([[n[0], n[1]]]) will work). Hopefully no one will care or notice 9 years ago
  Jim Rybarski 13139518b3 Bump version to 2.1.0, updated documentation, removed skips from some unit tests 9 years ago
  Jim Rybarski e992f743c7 resolves #132: The `select` method now allows you to specify a range of images to iterate over 9 years ago
  jim a7ddaadf39 bumped version to 2.0.2 9 years ago
  jim 7064e6f0ae #143 discovered that humans can ruin everything 9 years ago