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Extend unit tests

feature/load_slices
Ruben Verweij 8 years ago
parent
commit
5251464df5
3 changed files with 57 additions and 3 deletions
  1. +2
    -2
      nd2reader/legacy.py
  2. +30
    -1
      tests/test_common.py
  3. +25
    -0
      tests/test_legacy.py

+ 2
- 2
nd2reader/legacy.py View File

@ -91,7 +91,7 @@ class Nd2(object):
int: the pixel height of the image
"""
return self.reader.metadata["height"]
return self.reader.metadata["height"] if self.reader.metadata["height"] is not None else 0
@property
def width(self):
@ -101,7 +101,7 @@ class Nd2(object):
int: the pixel width of the image
"""
return self.reader.metadata["width"]
return self.reader.metadata["width"] if self.reader.metadata["width"] is not None else 0
@property
def z_levels(self):


+ 30
- 1
tests/test_common.py View File

@ -1,9 +1,13 @@
import io
import unittest
from os import path
import six
import struct
from nd2reader.artificial import ArtificialND2
from nd2reader.common import get_version, parse_version, parse_date, _add_to_metadata
from nd2reader.common import get_version, parse_version, parse_date, _add_to_metadata, _parse_unsigned_char, \
_parse_unsigned_int, _parse_unsigned_long, _parse_double, _parse_string
from nd2reader.exceptions import InvalidVersionError
class TestCommon(unittest.TestCase):
@ -27,6 +31,10 @@ class TestCommon(unittest.TestCase):
expected = (3, 0)
self.assertTupleEqual(actual, expected)
def test_parse_version_invalid(self):
data = 'ND2 FILE SIGNATURE CHUNK NAME!Version2.2.3'
self.assertRaises(InvalidVersionError, parse_version, data)
def test_get_version_from_file(self):
self.create_test_nd2()
@ -62,3 +70,24 @@ class TestCommon(unittest.TestCase):
metadata = {'test': ['value1', 'value2']}
_add_to_metadata(metadata, 'test', 'value3')
self.assertDictEqual(metadata, {'test': ['value1', 'value2', 'value3']})
@staticmethod
def _prepare_bin_stream(format, value):
file = io.BytesIO()
data = struct.pack(format, value)
file.write(data)
file.seek(0)
return file
def test_parse_functions(self):
file = self._prepare_bin_stream("B", 9)
self.assertEqual(_parse_unsigned_char(file), 9)
file = self._prepare_bin_stream("I", 333)
self.assertEqual(_parse_unsigned_int(file), 333)
file = self._prepare_bin_stream("Q", 7564332)
self.assertEqual(_parse_unsigned_long(file), 7564332)
file = self._prepare_bin_stream("d", 47.9)
self.assertEqual(_parse_double(file), 47.9)

+ 25
- 0
tests/test_legacy.py View File

@ -0,0 +1,25 @@
import unittest
from os import path
from nd2reader.artificial import ArtificialND2
from nd2reader.legacy import Nd2
class TestLegacy(unittest.TestCase):
def create_test_nd2(self):
with ArtificialND2(self.test_file) as artificial:
artificial.close()
def setUp(self):
dir_path = path.dirname(path.realpath(__file__))
self.test_file = path.join(dir_path, 'test_data/test.nd2')
def test_can_open_test_file(self):
self.create_test_nd2()
with Nd2(self.test_file) as reader:
self.assertEqual(reader.width, 0)
self.assertEqual(reader.height, 0)
self.assertEqual(len(reader.z_levels), 1)
self.assertEqual(len(reader.channels), 0)
self.assertEqual(len(reader.frames), 1)

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