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zolfa-nd2reader
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408 Commits
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204 MiB
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189 Commits (34191adb61ff0c4092854f531cad342d14c6145e)

Author SHA1 Message Date
  Ruben Verweij 34191adb61 Unit testing: test the correct parsing of image_attributes 7 years ago
  Ruben Verweij 589345ebac Add a class priority so this reader will be loaded before the Bioformats reader 7 years ago
  Ruben Verweij 1a3a78f34c Add try/except blocks to make code more robust + fix unit tests 7 years ago
  Ruben Verweij 9f3e4c1b35 Extend artificial to also write the label_map + data to file for more extensive unit testing 7 years ago
  Ruben Verweij 6128ba4838 Fix imports of pims and release 3.0.4 7 years ago
  Ruben Verweij 09bd870734 Fix small bug when uiCount cannot be found 7 years ago
  Ruben Verweij e7555f87de Version 3.0.3 7 years ago
  Ruben Verweij f5301c039d Add a third method to determine the loop sampling interval 7 years ago
  Ruben Verweij cbdec0fdc9 Cache timesteps and add frame rate property 7 years ago
  Ruben Verweij 9f96d23988 Always set 't' axis 7 years ago
  Ruben Verweij 5f43890053 Also get sampling interval when dAvgPeriodDiff is not set 7 years ago
  Ruben Verweij 9c957a1d0a Only setup certain axes if size > 1 7 years ago
  Ruben Verweij 30457e5931 Update version 3.0.2 7 years ago
  Ruben Verweij df7913e6b3 Issue #2: fix calculation of image group number when there is no z-axis 7 years ago
  Ruben Verweij d4e505779d Issue #2: clean up axes handling, guess a better default axis 7 years ago
  Ruben Verweij 80a6e51a77 Fix issue #2 by following PIMS conventions more closely 7 years ago
  Ruben Verweij 45674ff241 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention 7 years ago
  Ruben Verweij 0bd5bdc0fd version 3.0.1: Include LICENSE via MANIFEST.in for conda forge 7 years ago
  Ruben Verweij 107c05293d Fix the number of frames 7 years ago
  Ruben Verweij da38f7cd66 Add more unit test for common + fix possibly endless loop 7 years ago
  Ruben Verweij 3590a7ec6b Fix creating test file for unit tests 7 years ago
  Ruben Verweij b640490de1 Bug fixes by testing different .nd2 files 7 years ago
  Ruben Verweij 480e231d17 Bump version number to reflect api changes 7 years ago
  Ruben Verweij 1b38242d81 Extend unit tests 7 years ago
  Ruben Verweij a5417099b0 Extend unit tests 7 years ago
  Ruben Verweij 5251464df5 Extend unit tests 7 years ago
  Ruben Verweij cfd6b93cca New documentation 7 years ago
  Ruben Verweij b0f22eb83b Very basic Reader test 7 years ago
  Ruben Verweij d2255ee123 Last test of LabelMap 7 years ago
  Ruben Verweij 4490d7b830 Code fixes 7 years ago
  Ruben Verweij 19c5db83af Test the LabelMap 7 years ago
  Ruben Verweij cb7cb05f74 Add test for Parser 7 years ago
  Ruben Verweij eb12a4cfd4 Add ArtificialND2 class to help in testing nd2 file reading and parsing 7 years ago
  Ruben Verweij 6d1fd6d243 Provide backwards compatibility with old 2.1.3 version 7 years ago
  Ruben Verweij 048e101e2d Cleanup documentation 7 years ago
  Ruben Verweij f3d5c62042 Improve documentation 7 years ago
  Ruben Verweij dab0b4aca8 docstrings 7 years ago
  Ruben Verweij 5f863a3ca5 Cleanup docstrings to use google python docs 7 years ago
  Ruben Verweij 00cc869497 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 7 years ago
  Ruben Verweij c2e48e36db Add ability to bundle the color axis 7 years ago
  Ruben Verweij 3b07b58d01 Add ability to bundle the color axis 7 years ago
  Ruben Verweij 334817cead Fix bug 7 years ago
  Ruben Verweij bd10811aee Add unit tests for opening files and axis sizes 7 years ago
  Ruben Verweij fa0e0c9a86 Parse part of ND experiment metadata 7 years ago
  Ruben Verweij a56a7cc665 Fix dtype at np.float64 7 years ago
  Ruben Verweij a716471131 Small fixes 7 years ago
  Ruben Verweij 63a286d167 Hopefully fix Python 2 import error 7 years ago
  Ruben Verweij 685afb16ab Rename exceptions 7 years ago
  Ruben Verweij 7c779b3a40 Small refactor of common functions 7 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 7 years ago