Ruben Verweij
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5251464df5
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Extend unit tests
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8 years ago |
Ruben Verweij
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cfd6b93cca
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New documentation
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8 years ago |
Ruben Verweij
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b0f22eb83b
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Very basic Reader test
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8 years ago |
Ruben Verweij
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d2255ee123
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Last test of LabelMap
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8 years ago |
Ruben Verweij
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4490d7b830
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Code fixes
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8 years ago |
Ruben Verweij
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19c5db83af
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Test the LabelMap
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8 years ago |
Ruben Verweij
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cb7cb05f74
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Add test for Parser
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8 years ago |
Ruben Verweij
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eb12a4cfd4
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Add ArtificialND2 class to help in testing nd2 file reading and parsing
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8 years ago |
Ruben Verweij
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6d1fd6d243
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Provide backwards compatibility with old 2.1.3 version
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8 years ago |
Ruben Verweij
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048e101e2d
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Cleanup documentation
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8 years ago |
Ruben Verweij
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f3d5c62042
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Improve documentation
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8 years ago |
Ruben Verweij
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dab0b4aca8
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docstrings
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8 years ago |
Ruben Verweij
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5f863a3ca5
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Cleanup docstrings to use google python docs
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8 years ago |
Ruben Verweij
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00cc869497
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Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader
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8 years ago |
Ruben Verweij
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c2e48e36db
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Add ability to bundle the color axis
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8 years ago |
Ruben Verweij
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3b07b58d01
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Add ability to bundle the color axis
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8 years ago |
Ruben Verweij
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334817cead
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Fix bug
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8 years ago |
Ruben Verweij
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bd10811aee
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Add unit tests for opening files and axis sizes
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8 years ago |
Ruben Verweij
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fa0e0c9a86
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Parse part of ND experiment metadata
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8 years ago |
Ruben Verweij
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a56a7cc665
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Fix dtype at np.float64
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8 years ago |
Ruben Verweij
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a716471131
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Small fixes
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8 years ago |
Ruben Verweij
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63a286d167
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Hopefully fix Python 2 import error
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8 years ago |
Ruben Verweij
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685afb16ab
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Rename exceptions
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8 years ago |
Ruben Verweij
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7c779b3a40
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Small refactor of common functions
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8 years ago |
Ruben Verweij
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cb2c06f9a5
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Complete refactor
- use only one parser for v3 files
- merge some classes
- return metadata as raw metadata and dictionary
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8 years ago |
Ruben Verweij
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6f151e8701
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Reduce code complexity
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8 years ago |
Ruben Verweij
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d19a9c305b
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Refactor, add metadata to Frame objects, support PIMS open function
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8 years ago |
Ruben Verweij
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7b7bf1ac25
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Start porting to PIMS framework, cleanup unnecessary files
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8 years ago |
Ruben Verweij
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4ffc0bdf85
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Correctly scale ROI sizes and position
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8 years ago |
Ruben Verweij
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d0bb78f67a
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Add ROI type and shape
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8 years ago |
Ruben Verweij
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6f800c49f6
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Added parsing for basic ROI metadata.
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8 years ago |
jim
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340d74fb8e
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deleted CameraSettings since it's no longer used
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9 years ago |
Jim Rybarski
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b80ed8c75b
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possible fix for weird problem resulting from having many exposure times
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9 years ago |
jim
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4a48847630
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resolves #152: images truly act like numpy arrays now and are also displayable
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9 years ago |
jim
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4194f073dd
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resolves #150, #149: removed camera settings entirely because they are buggy and terrible
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9 years ago |
jim
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19c45ed952
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Version 2.1.1
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9 years ago |
jim
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a1d73157b4
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#147: this mostly resolves the issue and I'm going to close it out with this patch, however, I'm not satisfied with the solution (taken from http://stackoverflow.com/questions/16805987/python-numpy-ndarray-subclasses-and-zero-rank-arrays). While this allows most numpy operations to work, you still can't do basic things like adding two Image objects (even though np.sum([[n[0], n[1]]]) will work). Hopefully no one will care or notice
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9 years ago |
Jim Rybarski
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13139518b3
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Bump version to 2.1.0, updated documentation, removed skips from some unit tests
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9 years ago |
Jim Rybarski
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e992f743c7
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resolves #132: The `select` method now allows you to specify a range of images to iterate over
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9 years ago |
jim
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a7ddaadf39
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bumped version to 2.0.2
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9 years ago |
jim
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7064e6f0ae
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#143 discovered that humans can ruin everything
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9 years ago |
jim
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c3d7273dfa
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resolves #143: we can now programatically access the width of pixels in microns
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9 years ago |
jim
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4aa5a97e80
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bumped version to 2.0.1
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9 years ago |
jim
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9bbbf7ba28
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resolves #140
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9 years ago |
Jim Rybarski
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0289234391
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Potential fix for #138. Makes select() work with ND2s that have a single frame by iterating over a range of integers instead of the frames.
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9 years ago |
Jim Rybarski
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25c4ce7f78
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resolves #135. we're ready to publish version 2.0.0
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9 years ago |
Jim Rybarski
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343a39dd9d
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fixes #133. The index assigned to images produced by `select` was wrong.
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9 years ago |
jim
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faa50235d3
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moved public methods to the top of classes
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9 years ago |
Jim Rybarski
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47966b75dd
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resolves #129: renamed filter() to select()
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9 years ago |
Jim Rybarski
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7f359bacc1
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updated docs, fixed typos
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9 years ago |