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zolfa-nd2reader
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7 Commits (17606e0a47873988d53d1438c88e070d13b48d4b)

Author SHA1 Message Date
  Ruben Verweij a5417099b0 Extend unit tests 8 years ago
  Ruben Verweij 5251464df5 Extend unit tests 8 years ago
  Ruben Verweij cfd6b93cca New documentation 8 years ago
  Ruben Verweij 6d1fd6d243 Provide backwards compatibility with old 2.1.3 version 8 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 8 years ago
  Ruben Verweij d19a9c305b Refactor, add metadata to Frame objects, support PIMS open function 8 years ago
  Ruben Verweij 7b7bf1ac25 Start porting to PIMS framework, cleanup unnecessary files 8 years ago
  Ruben Verweij 6f800c49f6 Added parsing for basic ROI metadata. 8 years ago
  jim 4194f073dd resolves #150, #149: removed camera settings entirely because they are buggy and terrible 9 years ago
  Jim Rybarski e992f743c7 resolves #132: The `select` method now allows you to specify a range of images to iterate over 9 years ago
  jim 7064e6f0ae #143 discovered that humans can ruin everything 9 years ago
  jim c3d7273dfa resolves #143: we can now programatically access the width of pixels in microns 9 years ago
  Jim Rybarski 0289234391 Potential fix for #138. Makes select() work with ND2s that have a single frame by iterating over a range of integers instead of the frames. 9 years ago
  Jim Rybarski 25c4ce7f78 resolves #135. we're ready to publish version 2.0.0 9 years ago
  Jim Rybarski 343a39dd9d fixes #133. The index assigned to images produced by `select` was wrong. 9 years ago
  Jim Rybarski 47966b75dd resolves #129: renamed filter() to select() 9 years ago
  Jim Rybarski 7f359bacc1 updated docs, fixed typos 9 years ago
  Jim Rybarski f366f38009 resolves #114. added index to Images to help with testing. Increased test coverage for filter() 9 years ago
  Jim Rybarski e141b0504c #114: wrote fast filter that works, but we need way more testing for corner cases 9 years ago
  Jim Rybarski 1268b2768c #125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile 9 years ago
  Jim Rybarski 1436068d4c #125: refactored to make adding more metadata easier 9 years ago
  jim 09173fcb9e resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening 9 years ago
  jim cc2a49ac6d #110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index 9 years ago
  jim 7c0c8be065 resolves #119: removed some commented-out code and an unused import 9 years ago
  jim fd3c67d65b resolves #112: removed ImageGroup object and image_sets method, as they were deprecated because of their general uselessness 9 years ago
  Jim Rybarski 90ae0907de resolves #106: implemented missing method and added tests 9 years ago
  jim 2e6611b027 #101: Shows the text "Created:" even if there is no creation date 9 years ago
  jim c3a3cbadd4 resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr 9 years ago
  Jim Rybarski 963310178d fixed merge conflict and docs 9 years ago
  Jim Rybarski d49c5f03eb #96: documentation changes 9 years ago
  Jim Rybarski a9ccdb19ce resolves #96: added context manager 9 years ago
  Jim Rybarski 2b2ad95a82 fixed syntax errors 9 years ago
  Jim Rybarski ac91d388c1 cleaned up a bit 9 years ago
  jim e55029c1de resolves #90 9 years ago
  jim 544fd974eb #66 more refactoring 9 years ago
  jim 177530d657 #66 refactored init 9 years ago
  jim c096653a92 #66 interface refactoring is complete except for comments 9 years ago
  jim 949d0612d4 #66 began enormous refactor to support multiple versions of ND2s in an elegant way 9 years ago
  jim 55a3222e4f resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s. 9 years ago
  jim 86d2924d35 resolves #68: indexing was not returning the correct image and skipped frame entirely when there were multiple channels 9 years ago
  Jim Rybarski 49737f678f resolves #56 10 years ago
  jim 18bb3f5392 resolves #54: raises Index error when you go out of bounds 10 years ago
  jim 07e2297aaf #42 fixed dockerfile and makefile, got one passing test 10 years ago
  jim ae09b688b2 #42 refactored and tidied up a bit, created test files 10 years ago
  Jim Rybarski a40b243abb resolves #40: adds slicing semantics 10 years ago
  Jim Rybarski 454f5529fe #39 fixed image sets 10 years ago
  Jim Rybarski 89ddce3a7b resolves #39 10 years ago
  Jim Rybarski 0f9c6128e3 #39: field of view works 10 years ago
  Jim Rybarski e8cb08f4cc #39: calculating channel and z_level works right 10 years ago
  Jim Rybarski c9d3a82930 #39: getting individual images works, however, z_level and field of view are wrong 10 years ago