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zolfa-nd2reader
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Branch: feature/load_slices
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275 Commits (feature/load_slices)

Author SHA1 Message Date
  Zolfa ffac15e083 added x coordiantes and rotation matrix readout 3 years ago
  Zolfa 25ec773d1d Minor changes for dev branched version release 3 years ago
  Zolfa f331c8fbcd Add functions to read only rectangular regions. 4 years ago
  Gabriele Girelli 0acc42eb66 Fixed missing filename path. 4 years ago
  Gabriele Girelli 5a2d9ac764 Update stitched.py 4 years ago
  Gabriele Girelli e029f3c0b7 Fixed func def 4 years ago
  Gabriele Girelli 165b8095c7 Refactored. 4 years ago
  Gabriele Girelli 7cee1a70cc Using numpy assets when possible, and formatted with black 4 years ago
  Gabriele Girelli 2cd36638b1 Switched from warning to raising exception and improved message 4 years ago
  Gabriele Girelli e969424a63 Improved assert and warning messages 4 years ago
  Gabriele Girelli fdc10ca56e Fixed new init method 4 years ago
  Gabriele Girelli 0b8ae27dde Allowed for fh to be either str or IO, and formatted with black. 4 years ago
  Gabriele Girelli 1dd4827a6b Changed structure to check/remove method pair 4 years ago
  Gabriele Girelli ee4b5ade59 Allowing case of multiple unwanted bytes per step 4 years ago
  Gabriele Girelli 5763229496 Complexity 4 years ago
  Gabriele Girelli 62c86f34e4 Update parser.py 4 years ago
  Gabriele Girelli e5d4eebd17 Complexity 4 years ago
  Gabriele Girelli 460583ba14 Fixed complexity 4 years ago
  Gabriele Girelli b84b52d93d Regenerated Reader 4 years ago
  Gabriele Girelli 77016ccbaf Fixed complexity 4 years ago
  Gabriele Girelli 9b0b4b137a Removed empty bytes at channel subchunk ends 4 years ago
  Gabriele Girelli ce29f90f20 Update reader.py 4 years ago
  Ruben Verweij d0e4abcf55 Fix issue #34 5 years ago
  Ruben Verweij b496774361 Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate 5 years ago
  Ruben Verweij 0a16ce9003 Fix error in loop handling 5 years ago
  Gabriele Girelli 2508bef3e0 f-strings not supported by Python3.6- 5 years ago
  Ruben Verweij c54d37a606 Fix typo in z-level check 5 years ago
  Ulugbek Abdullaev 1fc0389059 add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading 5 years ago
  Gabriele Girelli e011b578e6 Removed self.__class__ from super() call 5 years ago
  Ruben Verweij 58d60ebf88 Version 3.2.3 due to build error of new version number storage system 5 years ago
  Ruben Verweij a92617a567 New version 3.2.2 5 years ago
  Gabriele Girelli 5fd18220ef Update raw_metadata.py 5 years ago
  Gabriele Girelli 60dedbe71b Update raw_metadata.py 5 years ago
  Gabriele Girelli 6f27d14339 Update raw_metadata.py 5 years ago
  Gabriele Girelli 96695d50ab Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch 5 years ago
  Ruben Verweij 0fd78a4175 Resolve issue #24 5 years ago
  Ruben Verweij 9b205ca1da Issue #24: only return a Frame when bundle_axes is only y,x 5 years ago
  Ruben Verweij 8b2f506990 Update get_frame_vczyx function based on feedback in issue #24 5 years ago
  Ruben Verweij d98e7acb71 Fixes issue #25, adds unit tests and release 3.2.1 5 years ago
  Ruben Verweij afa38ea0e7 Fixes issue 25 5 years ago
  Ruben Verweij 010073d24c Fix issue with bundle_axes and get_frame 5 years ago
  Ruben Verweij 14fb182e33 Update version 3.2.0 5 years ago
  unknown 54fd7253b6 More informative warning if gap frames encountered and filled with np.nan 5 years ago
  unknown 5d8fd312bc Handle gap frames with np.nan-filled array and issue warning about it. 5 years ago
  unknown 6649d577a8 removed NoImageError call, class def, and import references since now redundant 5 years ago
  Ruben Verweij 94fa888c09 Add acquisition times to parser 5 years ago
  Ruben Verweij bd09f668a7 Fixes issue #11 5 years ago
  Ruben Verweij 16cb8fb67f Fixes issue #16 5 years ago
  Ruben Verweij b6aa323420 Fallback function for old get_frame_2D function 5 years ago
  unknown 52e52b3616 fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master 5 years ago