Zolfa
ffac15e083
added x coordiantes and rotation matrix readout
3 years ago
Zolfa
25ec773d1d
Minor changes for dev branched version release
3 years ago
Zolfa
f331c8fbcd
Add functions to read only rectangular regions.
4 years ago
Ruben Verweij
728a425a25
Merge pull request #43 from ggirelli/ggirelli-filename-patch
Fixed missing filename path.
4 years ago
Gabriele Girelli
0acc42eb66
Fixed missing filename path.
4 years ago
Ruben Verweij
f73cd93674
Merge pull request #40 from ggirelli/ggirelli-patch-parser-for-stitched-images
Removed empty bytes at channel subchunk ends for issue #31
4 years ago
Gabriele Girelli
5a2d9ac764
Update stitched.py
4 years ago
Ruben Verweij
c0abe63fe9
Merge pull request #39 from ggirelli/ggirelli-patch-nd2reader-from-file
Update to reader.py for issue #35
4 years ago
Gabriele Girelli
e029f3c0b7
Fixed func def
4 years ago
Gabriele Girelli
165b8095c7
Refactored.
4 years ago
Gabriele Girelli
6a4ffcdc73
Added get_image test of stitched sample
4 years ago
Gabriele Girelli
7cee1a70cc
Using numpy assets when possible, and formatted with black
4 years ago
Gabriele Girelli
2cd36638b1
Switched from warning to raising exception and improved message
4 years ago
Gabriele Girelli
e969424a63
Improved assert and warning messages
4 years ago
Gabriele Girelli
fdc10ca56e
Fixed new init method
4 years ago
Gabriele Girelli
481ce67e34
Implemented test.
4 years ago
Gabriele Girelli
0b8ae27dde
Allowed for fh to be either str or IO, and formatted with black.
4 years ago
Gabriele Girelli
1dd4827a6b
Changed structure to check/remove method pair
4 years ago
Gabriele Girelli
ee4b5ade59
Allowing case of multiple unwanted bytes per step
4 years ago
Gabriele Girelli
5763229496
Complexity
4 years ago
Gabriele Girelli
62c86f34e4
Update parser.py
4 years ago
Gabriele Girelli
e5d4eebd17
Complexity
4 years ago
Gabriele Girelli
460583ba14
Fixed complexity
4 years ago
Gabriele Girelli
b84b52d93d
Regenerated Reader
4 years ago
Gabriele Girelli
77016ccbaf
Fixed complexity
4 years ago
Gabriele Girelli
9b0b4b137a
Removed empty bytes at channel subchunk ends
Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).
4 years ago
Gabriele Girelli
ce29f90f20
Update reader.py
4 years ago
Ruben Verweij
a2385164a1
update Travis settings
5 years ago
Ruben Verweij
d0e4abcf55
Fix issue #34
5 years ago
Ruben Verweij
b496774361
Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
5 years ago
Ruben Verweij
0a16ce9003
Fix error in loop handling
5 years ago
Ruben Verweij
c0f289f4b5
Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
5 years ago
Ulugbek Abdullaev
a051a70350
Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
5 years ago
Gabriele Girelli
2508bef3e0
f-strings not supported by Python3.6-
5 years ago
Ruben Verweij
c54d37a606
Fix typo in z-level check
5 years ago
Ulugbek Abdullaev
1fc0389059
add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
5 years ago
Ruben Verweij
c038c5b24d
Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
17606e0a47
Fix codeclimate integration
5 years ago
Ruben Verweij
ffef793c83
Update README.md
5 years ago
Ruben Verweij
7c636ac002
Remove support for Python < 3.5
5 years ago
Gabriele Girelli
e011b578e6
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
58d60ebf88
Version 3.2.3 due to build error of new version number storage system
5 years ago
Ruben Verweij
9297cc86da
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
a92617a567
New version 3.2.2
5 years ago
Ruben Verweij
b868fcabc6
Update release.txt
5 years ago
Ruben Verweij
66361332cd
Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
0d87fe32bc
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
61d6f99548
Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Gabriele Girelli
5fd18220ef
Update raw_metadata.py
5 years ago
Gabriele Girelli
60dedbe71b
Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
5 years ago