Ruben Verweij
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e309631c84
|
Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
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5 years ago |
Gabriele Girelli
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90a4ffc747
|
f-strings not supported by Python3.6-
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5 years ago |
Ulugbek Abdullaev
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9059a15781
|
add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
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5 years ago |
Gabriele Girelli
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fe2bb5932c
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Removed self.__class__ from super() call
|
5 years ago |
Ruben Verweij
|
4d9bc03c44
|
Resolve issue #24
|
5 years ago |
Ruben Verweij
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31f80554b1
|
Issue #24: only return a Frame when bundle_axes is only y,x
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5 years ago |
Ruben Verweij
|
322969bceb
|
Update get_frame_vczyx function based on feedback in issue #24
|
5 years ago |
Ruben Verweij
|
38a0def075
|
Fixes issue 25
|
5 years ago |
Ruben Verweij
|
54cce884c1
|
Fix issue with bundle_axes and get_frame
|
5 years ago |
Ruben Verweij
|
3e4845b309
|
Fallback function for old get_frame_2D function
|
5 years ago |
Ruben Verweij
|
faa495ecdb
|
Use _register_get_frame functions
|
6 years ago |
Gregor Lichtner
|
4efd9a2ea4
|
added image events to parser
|
6 years ago |
jbf81tb
|
75f19554e4
|
get_frame_2D fix
|
6 years ago |
Ruben Verweij
|
f9665259df
|
Fix fps calculation
|
6 years ago |
Ruben Verweij
|
93f886e9e9
|
Fix to take into account real acquisition times when calculating framerate instead of the set interval (which is sometimes inaccurate)
|
6 years ago |
Ruben Verweij
|
5673262295
|
New release
|
7 years ago |
Ruben Verweij
|
731a05214a
|
Fix #4
|
7 years ago |
Ruben Verweij
|
86bd2eb99d
|
Version 3.0.6: Add FOV support
|
7 years ago |
Ruben Verweij
|
81b785d1e7
|
Test legacy Nd2, parser, reader fixes
|
7 years ago |
Ruben Verweij
|
85e15ac86b
|
Add a class priority so this reader will be loaded before the Bioformats reader
|
7 years ago |
Ruben Verweij
|
8c84fa6c17
|
Fix imports of pims and release 3.0.4
|
7 years ago |
Ruben Verweij
|
94e10dbe1f
|
Cache timesteps and add frame rate property
|
8 years ago |
Ruben Verweij
|
bce39c1acc
|
Always set 't' axis
|
8 years ago |
Ruben Verweij
|
5f77688aed
|
Only setup certain axes if size > 1
|
8 years ago |
Ruben Verweij
|
16288909b9
|
Issue #2: clean up axes handling, guess a better default axis
|
8 years ago |
Ruben Verweij
|
b7c60e3a27
|
Fix issue #2 by following PIMS conventions more closely
|
8 years ago |
Ruben Verweij
|
10c2589348
|
Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention
|
8 years ago |
Ruben Verweij
|
f88965ce8d
|
Fix the number of frames
|
8 years ago |
Ruben Verweij
|
0ba84df3f9
|
Bump version number to reflect api changes
|
8 years ago |
Ruben Verweij
|
2c121dc0ff
|
New documentation
|
8 years ago |
Ruben Verweij
|
aa7e05f1d2
|
Very basic Reader test
|
8 years ago |
Ruben Verweij
|
c6e5a13a0d
|
Provide backwards compatibility with old 2.1.3 version
|
8 years ago |
Ruben Verweij
|
480432df50
|
Improve documentation
|
8 years ago |
Ruben Verweij
|
2f2f138f17
|
docstrings
|
8 years ago |
Ruben Verweij
|
60378ad06f
|
Cleanup docstrings to use google python docs
|
8 years ago |
Ruben Verweij
|
4841c09eb7
|
Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader
|
8 years ago |
Ruben Verweij
|
0ba13656de
|
Add ability to bundle the color axis
|
8 years ago |
Ruben Verweij
|
a398edf699
|
Add ability to bundle the color axis
|
8 years ago |
Ruben Verweij
|
8f513fde74
|
Add unit tests for opening files and axis sizes
|
8 years ago |
Ruben Verweij
|
a716471131
|
Small fixes
|
8 years ago |
Ruben Verweij
|
63a286d167
|
Hopefully fix Python 2 import error
|
8 years ago |
Ruben Verweij
|
685afb16ab
|
Rename exceptions
|
8 years ago |
Ruben Verweij
|
cb2c06f9a5
|
Complete refactor
- use only one parser for v3 files
- merge some classes
- return metadata as raw metadata and dictionary
|
8 years ago |
Ruben Verweij
|
d19a9c305b
|
Refactor, add metadata to Frame objects, support PIMS open function
|
8 years ago |
Ruben Verweij
|
7b7bf1ac25
|
Start porting to PIMS framework, cleanup unnecessary files
|
8 years ago |