|
|
@ -67,10 +67,9 @@ class Parser(object): |
|
|
|
try: |
|
|
|
timestamp, image = self._get_raw_image_data(image_group_number, channel_offset, self.metadata["height"], |
|
|
|
self.metadata["width"]) |
|
|
|
except NoImageError: |
|
|
|
return None |
|
|
|
except (TypeError, NoImageError): |
|
|
|
return Frame([], frame_no=frame_number, metadata=self._get_frame_metadata()) |
|
|
|
else: |
|
|
|
image.add_params(index, timestamp, frame_number, field_of_view, channel, z_level) |
|
|
|
return image |
|
|
|
|
|
|
|
def get_image_by_attributes(self, frame_number, field_of_view, channel_name, z_level, height, width): |
|
|
@ -90,11 +89,10 @@ class Parser(object): |
|
|
|
try: |
|
|
|
timestamp, raw_image_data = self._get_raw_image_data(image_group_number, self._channel_offset[channel_name], |
|
|
|
height, width) |
|
|
|
image = Frame(raw_image_data, frame_no=frame_number, metadata=self._get_frame_metadata()) |
|
|
|
except (TypeError, NoImageError): |
|
|
|
return None |
|
|
|
return Frame([], frame_no=frame_number, metadata=self._get_frame_metadata()) |
|
|
|
else: |
|
|
|
return image |
|
|
|
return raw_image_data |
|
|
|
|
|
|
|
def get_dtype_from_metadata(self): |
|
|
|
""" |
|
|
@ -255,7 +253,8 @@ class Parser(object): |
|
|
|
# other cycle to reduce phototoxicity, but NIS Elements still allocated memory as if we were going to take |
|
|
|
# them every cycle. |
|
|
|
if np.any(image_data): |
|
|
|
return timestamp, Frame(image_data) |
|
|
|
return timestamp, Frame(image_data, metadata=self._get_frame_metadata()) |
|
|
|
|
|
|
|
raise NoImageError |
|
|
|
|
|
|
|
def _get_frame_metadata(self): |
|
|
|