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nd2reader
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  • 7a83641 (zolfa-add_slices_loading) added x coordiantes and rotation matrix readout by Lorenzo ZOLFANELLI 2022-03-21 14:52:34 +0100
  • 3f18594 Minor changes for dev branched version release by Lorenzo ZOLFANELLI 2021-10-12 22:28:39 +0200
  • 05b7fee Add functions to read only rectangular regions. by Lorenzo ZOLFANELLI 2021-01-25 18:42:45 +0100
  • 0a1988b (HEAD -> zolfariot-partialimages-draft) first messy roi loading modifications by Lorenzo Zolfanelli 2021-01-22 00:37:26 +0100
  • df6d70e (master) Merge pull request #43 from ggirelli/ggirelli-filename-patch by Ruben Verweij 2020-10-27 14:43:26 +0100
  • e02dd3c Fixed missing filename path. by Gabriele Girelli 2020-10-25 19:05:31 +0100
  • 18527bf Merge pull request #40 from ggirelli/ggirelli-patch-parser-for-stitched-images by Ruben Verweij 2020-09-14 11:11:22 +0200
  • 5fafcf1 Update stitched.py by Gabriele Girelli 2020-09-02 21:14:24 +0200
  • cbb27ba Merge pull request #39 from ggirelli/ggirelli-patch-nd2reader-from-file by Ruben Verweij 2020-09-02 14:23:49 +0200
  • 1a2bfff Fixed func def by Gabriele Girelli 2020-08-31 11:58:49 +0200
  • b3421d5 Refactored. by Gabriele Girelli 2020-08-31 11:55:15 +0200
  • af6e836 Added get_image test of stitched sample by Gabriele Girelli 2020-08-31 11:41:41 +0200
  • 5562755 Using numpy assets when possible, and formatted with black by Gabriele Girelli 2020-08-31 11:41:29 +0200
  • 699e710 Switched from warning to raising exception and improved message by Gabriele Girelli 2020-08-31 10:55:51 +0200
  • 613d86d Improved assert and warning messages by Gabriele Girelli 2020-08-31 10:45:55 +0200
  • 09dedf2 Fixed new init method by Gabriele Girelli 2020-08-31 10:40:59 +0200
  • 9a7945d Implemented test. by Gabriele Girelli 2020-08-31 10:40:47 +0200
  • fca6cb1 Allowed for fh to be either str or IO, and formatted with black. by Gabriele Girelli 2020-08-31 10:32:38 +0200
  • 2a3c1a3 Changed structure to check/remove method pair by Gabriele Girelli 2020-08-15 12:19:07 +0200
  • db5d8e3 Allowing case of multiple unwanted bytes per step by Gabriele Girelli 2020-08-15 12:14:42 +0200
  • 25f7e5f Complexity by Gabriele Girelli 2020-08-15 12:12:47 +0200
  • 72cf9fc Update parser.py by Gabriele Girelli 2020-08-15 12:07:27 +0200
  • b2a3b88 Complexity by Gabriele Girelli 2020-08-15 12:01:48 +0200
  • 27ed229 Fixed complexity by Gabriele Girelli 2020-08-15 11:58:57 +0200
  • 2daaa53 Regenerated Reader by Gabriele Girelli 2020-08-15 11:58:10 +0200
  • 2410545 Fixed complexity by Gabriele Girelli 2020-08-15 11:56:38 +0200
  • 93949b3 Removed empty bytes at channel subchunk ends by Gabriele Girelli 2020-08-15 11:52:03 +0200
  • 5090f93 Update reader.py by Gabriele Girelli 2020-08-13 19:51:26 +0200
  • 492d0ec update Travis settings by Ruben Verweij 2020-05-04 16:46:30 +0200
  • eeb4bd1 Fix issue #34 by Ruben Verweij 2020-05-04 16:33:45 +0200
  • 740b8b1 Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate by Ruben Verweij 2020-04-21 13:56:16 +0200
  • 607c1e6 Fix error in loop handling by Ruben Verweij 2020-03-18 21:27:13 +0100
  • 9b2f9ca Merge pull request #32 from ulugbekna/handle-invalid-file-extension by Ruben Verweij 2020-02-23 17:46:45 +0100
  • 5816df1 Merge pull request #1 from ggirelli/patch-1 by Ulugbek Abdullaev 2020-02-18 20:42:29 +0100
  • 595978c f-strings not supported by Python3.6- by Gabriele Girelli 2020-02-17 17:28:39 +0100
  • 995d920 Fix typo in z-level check by Ruben Verweij 2020-01-24 14:39:00 +0100
  • 538910b add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading by Ulugbek Abdullaev 2019-12-07 23:55:31 +0100
  • 74d384e Merge pull request #33 from ggirelli/master by Ruben Verweij 2020-01-20 15:39:49 +0100
  • 1728086 Fix codeclimate integration by Ruben Verweij 2020-01-20 15:34:49 +0100
  • a16702b Update README.md by Ruben Verweij 2020-01-20 15:27:45 +0100
  • 0e16251 Remove support for Python < 3.5 by Ruben Verweij 2020-01-20 15:26:15 +0100
  • 1c6f517 Removed self.__class__ from super() call by Gabriele Girelli 2020-01-20 13:47:19 +0100
  • 4eea6a8 Version 3.2.3 due to build error of new version number storage system by Ruben Verweij 2020-01-06 11:15:55 +0100
  • fe644d2 Merge branch 'master' of github.com:rbnvrw/nd2reader by Ruben Verweij 2020-01-06 10:54:50 +0100
  • 1d56096 New version 3.2.2 by Ruben Verweij 2020-01-06 10:54:44 +0100
  • de6a495 Update release.txt by Ruben Verweij 2020-01-06 10:47:08 +0100
  • 312e088 Merge pull request #30 from rbnvrw/add-code-of-conduct-1 by Ruben Verweij 2019-11-01 12:43:45 +0100
  • 5854a59 Create CODE_OF_CONDUCT.md by Ruben Verweij 2019-11-01 12:43:30 +0100
  • b6fdeb6 Merge pull request #28 from ggirelli/master by Ruben Verweij 2019-11-01 12:40:44 +0100
  • 30cc7d7 Update raw_metadata.py by Gabriele Girelli 2019-11-01 11:40:40 +0100
  • 64679f9 Update raw_metadata.py by Gabriele Girelli 2019-11-01 10:13:59 +0100
  • b87b5f6 Update raw_metadata.py by Gabriele Girelli 2019-10-31 16:09:29 +0100
  • 810682c Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch by Gabriele Girelli 2019-10-30 12:29:03 +0100
  • 3c24672 Resolve issue #24 by Ruben Verweij 2019-10-17 09:01:09 +0200
  • 2a21784 Issue #24: only return a Frame when bundle_axes is only y,x by Ruben Verweij 2019-10-16 14:56:43 +0200
  • 4430f19 Merge branch 'master' of github.com:rbnvrw/nd2reader by Ruben Verweij 2019-10-16 14:42:01 +0200
  • be1be6a Update get_frame_vczyx function based on feedback in issue #24 by Ruben Verweij 2019-10-16 14:41:52 +0200
  • bddf4e0 Update release.txt by Ruben Verweij 2019-10-15 09:58:29 +0200
  • 7e684ac Make unit test less specific to accomodate for different versions of struct by Ruben Verweij 2019-10-15 09:47:56 +0200
  • f83387c Fixes issue #25, adds unit tests and release 3.2.1 by Ruben Verweij 2019-10-15 09:44:32 +0200
  • 2af560a Fixes issue 25 by Ruben Verweij 2019-10-09 12:32:48 +0200
  • b17c9d1 Merge branch 'master' of github.com:rbnvrw/nd2reader by Ruben Verweij 2019-09-26 17:21:42 +0200
  • 06de827 Fix issue with bundle_axes and get_frame by Ruben Verweij 2019-09-26 17:21:36 +0200
  • c9ec384 Update release.txt by Ruben Verweij 2019-09-26 10:55:52 +0200
  • 3f3464f Update version 3.2.0 by Ruben Verweij 2019-09-26 10:42:55 +0200
  • 30b2ad9 Merge branch 'master' of github.com:rbnvrw/nd2reader by Ruben Verweij 2019-09-26 10:41:08 +0200
  • 14fa586 Version 3.2.0 by Ruben Verweij 2019-09-26 10:41:00 +0200
  • 75b78ca Merge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master by Ruben Verweij 2019-09-26 10:08:11 +0200
  • d844144 More informative warning if gap frames encountered and filled with np.nan by unknown 2019-09-25 15:05:46 -0400
  • f07eab0 Handle gap frames with np.nan-filled array and issue warning about it. by unknown 2019-09-24 13:49:57 -0400
  • e9cd68b removed NoImageError call, class def, and import references since now redundant by unknown 2019-09-20 14:03:30 -0400
  • 9e03588 Add acquisition times to parser by Ruben Verweij 2019-09-19 11:48:31 +0200
  • cd55b8f Fixes issue #11 by Ruben Verweij 2019-09-19 10:09:18 +0200
  • de1c2af Fixes issue #16 by Ruben Verweij 2019-09-19 09:40:17 +0200
  • c92b786 Fallback function for old get_frame_2D function by Ruben Verweij 2019-09-19 09:23:48 +0200
  • ae00cc1 fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master by unknown 2019-09-10 17:53:25 -0400
  • 1d43617 Use _register_get_frame functions by Ruben Verweij 2019-05-27 17:41:09 +0200
  • 14f8d70 Merge pull request #21 from glichtner/image-events by Ruben Verweij 2019-05-27 13:59:20 +0200
  • 48ad48c Merge pull request #20 from glichtner/valid-loops by Ruben Verweij 2019-05-27 13:57:52 +0200
  • ec080e4 added event names by Gregor Lichtner 2019-05-24 14:10:16 +0200
  • 690c17d fixed behavior when no events are available by Gregor Lichtner 2019-05-23 16:11:40 +0200
  • 47b009c added image events to parser by Gregor Lichtner 2019-05-23 11:39:55 +0200
  • 10601e4 include only valid loops in experiment metadata by Gregor Lichtner 2019-05-22 13:09:18 +0200
  • 3afa470 Merge pull request #15 from jbf81tb/master by Ruben Verweij 2019-05-10 19:49:41 +0200
  • 999424a get_frame_2D fix by jbf81tb 2019-05-09 12:59:59 -0400
  • 73fd0c9 Remove google analytics by Ruben Verweij 2019-04-30 10:30:15 +0200
  • 9243869 Rebuild docs by Ruben Verweij 2019-04-30 10:23:37 +0200
  • 30829d9 Update layout.html by Ruben Verweij 2019-04-30 10:17:50 +0200
  • f9a0222 update docs by Ruben Verweij 2019-03-11 21:14:33 +0100
  • 5c02923 Merge branch 'master' of github.com:rbnvrw/nd2reader by Ruben Verweij 2019-01-05 12:48:57 +0100
  • 37e6dfb Fix fps calculation by Ruben Verweij 2019-01-05 12:48:48 +0100
  • 024cf91 Docs v.3.1.0 by Ruben Verweij 2018-09-06 11:02:35 +0200
  • 611bed8 Version 3.1.0 by Ruben Verweij 2018-09-06 10:55:15 +0200
  • 5f60c5d Fix error by Ruben Verweij 2018-08-24 14:48:36 +0200
  • 138289f Fix formatting error by Ruben Verweij 2018-08-24 11:58:35 +0200
  • 2f468a1 Expand tests by Ruben Verweij 2018-08-23 16:17:52 +0200
  • da53fa8 Refactor by Ruben Verweij 2018-08-23 16:09:31 +0200
  • 8731bfa Refactor by Ruben Verweij 2018-08-23 15:45:47 +0200
  • bb1c566 Refactor by Ruben Verweij 2018-08-23 15:39:14 +0200
  • 06bd5d2 Refactor by Ruben Verweij 2018-08-23 15:35:42 +0200