Gabriele Girelli
b2a3b887ba
Complexity
4 years ago
Gabriele Girelli
27ed229f54
Fixed complexity
4 years ago
Gabriele Girelli
2daaa53a31
Regenerated Reader
4 years ago
Gabriele Girelli
2410545165
Fixed complexity
4 years ago
Gabriele Girelli
93949b3398
Removed empty bytes at channel subchunk ends
Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).
4 years ago
Ruben Verweij
492d0ec68d
update Travis settings
5 years ago
Ruben Verweij
eeb4bd1063
Fix issue #34
5 years ago
Ruben Verweij
740b8b1112
Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
5 years ago
Ruben Verweij
607c1e62ad
Fix error in loop handling
5 years ago
Ruben Verweij
9b2f9ca256
Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
5 years ago
Ulugbek Abdullaev
5816df198f
Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
5 years ago
Gabriele Girelli
595978cda0
f-strings not supported by Python3.6-
5 years ago
Ruben Verweij
995d920e5f
Fix typo in z-level check
5 years ago
Ulugbek Abdullaev
538910ba01
add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
5 years ago
Ruben Verweij
74d384eed6
Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
1728086d89
Fix codeclimate integration
5 years ago
Ruben Verweij
a16702bb72
Update README.md
5 years ago
Ruben Verweij
0e16251a24
Remove support for Python < 3.5
5 years ago
Gabriele Girelli
1c6f517366
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
4eea6a81a1
Version 3.2.3 due to build error of new version number storage system
5 years ago
Ruben Verweij
fe644d241b
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
1d560969c6
New version 3.2.2
5 years ago
Ruben Verweij
de6a495171
Update release.txt
5 years ago
Ruben Verweij
312e08893e
Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
5854a59d1b
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
b6fdeb60a5
Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Gabriele Girelli
30cc7d74ed
Update raw_metadata.py
5 years ago
Gabriele Girelli
64679f9426
Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
5 years ago
Gabriele Girelli
b87b5f6697
Update raw_metadata.py
5 years ago
Gabriele Girelli
810682c667
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Ruben Verweij
3c24672ebe
Resolve issue #24
5 years ago
Ruben Verweij
2a21784d62
Issue #24 : only return a Frame when bundle_axes is only y,x
5 years ago
Ruben Verweij
4430f19d5c
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
be1be6aefb
Update get_frame_vczyx function based on feedback in issue #24
5 years ago
Ruben Verweij
bddf4e00b4
Update release.txt
5 years ago
Ruben Verweij
7e684ac6fa
Make unit test less specific to accomodate for different versions of struct
5 years ago
Ruben Verweij
f83387ce04
Fixes issue #25 , adds unit tests and release 3.2.1
5 years ago
Ruben Verweij
2af560aa68
Fixes issue 25
5 years ago
Ruben Verweij
b17c9d1c89
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
06de827ffc
Fix issue with bundle_axes and get_frame
5 years ago
Ruben Verweij
c9ec384816
Update release.txt
5 years ago
Ruben Verweij
3f3464f239
Update version 3.2.0
5 years ago
Ruben Verweij
30b2ad9cd4
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
14fa586e26
Version 3.2.0
5 years ago
Ruben Verweij
75b78caf46
Merge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master
Fix to allow reading of ND2-files with missing frames.
5 years ago
unknown
d844144209
More informative warning if gap frames encountered and filled with np.nan
5 years ago
unknown
f07eab0160
Handle gap frames with np.nan-filled array and issue warning about it.
5 years ago
unknown
e9cd68bd44
removed NoImageError call, class def, and import references since now redundant
5 years ago
Ruben Verweij
9e0358882c
Add acquisition times to parser
5 years ago
Ruben Verweij
cd55b8ffdd
Fixes issue #11
5 years ago