Gabriele Girelli
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09dedf203d
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Fixed new init method
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4 years ago |
Gabriele Girelli
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9a7945d708
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Implemented test.
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4 years ago |
Gabriele Girelli
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fca6cb1c3b
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Allowed for fh to be either str or IO, and formatted with black.
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4 years ago |
Gabriele Girelli
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5090f930d7
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Update reader.py
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4 years ago |
Ruben Verweij
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492d0ec68d
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update Travis settings
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5 years ago |
Ruben Verweij
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eeb4bd1063
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Fix issue #34
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5 years ago |
Ruben Verweij
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740b8b1112
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Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
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5 years ago |
Ruben Verweij
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607c1e62ad
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Fix error in loop handling
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5 years ago |
Ruben Verweij
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9b2f9ca256
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Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
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5 years ago |
Ulugbek Abdullaev
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5816df198f
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Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
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5 years ago |
Gabriele Girelli
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595978cda0
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f-strings not supported by Python3.6-
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5 years ago |
Ruben Verweij
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995d920e5f
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Fix typo in z-level check
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5 years ago |
Ulugbek Abdullaev
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538910ba01
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add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
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5 years ago |
Ruben Verweij
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74d384eed6
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Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
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5 years ago |
Ruben Verweij
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1728086d89
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Fix codeclimate integration
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5 years ago |
Ruben Verweij
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a16702bb72
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Update README.md
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5 years ago |
Ruben Verweij
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0e16251a24
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Remove support for Python < 3.5
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5 years ago |
Gabriele Girelli
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1c6f517366
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Removed self.__class__ from super() call
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5 years ago |
Ruben Verweij
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4eea6a81a1
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Version 3.2.3 due to build error of new version number storage system
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5 years ago |
Ruben Verweij
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fe644d241b
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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1d560969c6
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New version 3.2.2
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5 years ago |
Ruben Verweij
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de6a495171
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Update release.txt
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5 years ago |
Ruben Verweij
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312e08893e
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Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
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5 years ago |
Ruben Verweij
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5854a59d1b
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Create CODE_OF_CONDUCT.md
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5 years ago |
Ruben Verweij
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b6fdeb60a5
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Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
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5 years ago |
Gabriele Girelli
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30cc7d74ed
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Update raw_metadata.py
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5 years ago |
Gabriele Girelli
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64679f9426
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Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
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5 years ago |
Gabriele Girelli
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b87b5f6697
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Update raw_metadata.py
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5 years ago |
Gabriele Girelli
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810682c667
|
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
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5 years ago |
Ruben Verweij
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3c24672ebe
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Resolve issue #24
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5 years ago |
Ruben Verweij
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2a21784d62
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Issue #24: only return a Frame when bundle_axes is only y,x
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5 years ago |
Ruben Verweij
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4430f19d5c
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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be1be6aefb
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Update get_frame_vczyx function based on feedback in issue #24
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5 years ago |
Ruben Verweij
|
bddf4e00b4
|
Update release.txt
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5 years ago |
Ruben Verweij
|
7e684ac6fa
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Make unit test less specific to accomodate for different versions of struct
|
5 years ago |
Ruben Verweij
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f83387ce04
|
Fixes issue #25, adds unit tests and release 3.2.1
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5 years ago |
Ruben Verweij
|
2af560aa68
|
Fixes issue 25
|
5 years ago |
Ruben Verweij
|
b17c9d1c89
|
Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
|
06de827ffc
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Fix issue with bundle_axes and get_frame
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5 years ago |
Ruben Verweij
|
c9ec384816
|
Update release.txt
|
5 years ago |
Ruben Verweij
|
3f3464f239
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Update version 3.2.0
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5 years ago |
Ruben Verweij
|
30b2ad9cd4
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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14fa586e26
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Version 3.2.0
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5 years ago |
Ruben Verweij
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75b78caf46
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Merge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master
Fix to allow reading of ND2-files with missing frames.
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5 years ago |
unknown
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d844144209
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More informative warning if gap frames encountered and filled with np.nan
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5 years ago |
unknown
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f07eab0160
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Handle gap frames with np.nan-filled array and issue warning about it.
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5 years ago |
unknown
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e9cd68bd44
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removed NoImageError call, class def, and import references since now redundant
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5 years ago |
Ruben Verweij
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9e0358882c
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Add acquisition times to parser
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5 years ago |
Ruben Verweij
|
cd55b8ffdd
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Fixes issue #11
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5 years ago |
Ruben Verweij
|
de1c2aff58
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Fixes issue #16
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5 years ago |