nd2reader

Commit Graph

Author	SHA1	Message	Date
Lorenzo Zolfanelli	0a1988bc69	first messy roi loading modifications	3 years ago
Gabriele Girelli	b3421d5634	Refactored.	4 years ago
Gabriele Girelli	55627552d4	Using numpy assets when possible, and formatted with black	4 years ago
Gabriele Girelli	699e7105eb	Switched from warning to raising exception and improved message	4 years ago
Gabriele Girelli	613d86db85	Improved assert and warning messages	4 years ago
Gabriele Girelli	2a3c1a317e	Changed structure to check/remove method pair	4 years ago
Gabriele Girelli	db5d8e3fb8	Allowing case of multiple unwanted bytes per step	4 years ago
Gabriele Girelli	25f7e5f661	Complexity	4 years ago
Gabriele Girelli	72cf9fca5d	Update parser.py	4 years ago
Gabriele Girelli	b2a3b887ba	Complexity	4 years ago
Gabriele Girelli	27ed229f54	Fixed complexity	4 years ago
Gabriele Girelli	93949b3398	Removed empty bytes at channel subchunk ends Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).	4 years ago
Ruben Verweij	3c24672ebe	Resolve issue #24	5 years ago
unknown	d844144209	More informative warning if gap frames encountered and filled with np.nan	5 years ago
unknown	f07eab0160	Handle gap frames with np.nan-filled array and issue warning about it.	5 years ago
unknown	e9cd68bd44	removed NoImageError call, class def, and import references since now redundant	5 years ago
Ruben Verweij	9e0358882c	Add acquisition times to parser	5 years ago
unknown	ae00cc1223	fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master	5 years ago
Ruben Verweij	1d43617c55	Use _register_get_frame functions	5 years ago
jbf81tb	999424a88e	get_frame_2D fix	5 years ago
Ruben Verweij	5f60c5d533	Fix error	6 years ago
Ruben Verweij	10348e68db	Workaround issue #6 , fix unit test timesteps	6 years ago
Ruben Verweij	96922d8f0b	3.0.9	6 years ago
Ruben Verweij	73ba16bedc	Extend unit tests	7 years ago
Ruben Verweij	4d21e4bdb1	Fix imports of pims and release 3.0.4	7 years ago
Ruben Verweij	27955c761a	Issue #2 : fix calculation of image group number when there is no z-axis	7 years ago
Ruben Verweij	4817f8b013	Add test for Parser	7 years ago
Ruben Verweij	480432df50	Improve documentation	7 years ago
Ruben Verweij	2f2f138f17	docstrings	7 years ago
Ruben Verweij	60378ad06f	Cleanup docstrings to use google python docs	7 years ago
Ruben Verweij	a56a7cc665	Fix dtype at np.float64	7 years ago
Ruben Verweij	a716471131	Small fixes	7 years ago
Ruben Verweij	63a286d167	Hopefully fix Python 2 import error	7 years ago
Ruben Verweij	685afb16ab	Rename exceptions	7 years ago
Ruben Verweij	cb2c06f9a5	Complete refactor - use only one parser for v3 files - merge some classes - return metadata as raw metadata and dictionary	7 years ago
Jim Rybarski	b80ed8c75b	possible fix for weird problem resulting from having many exposure times	8 years ago
jim	9bbbf7ba28	resolves #140	9 years ago
Jim Rybarski	343a39dd9d	fixes #133 . The index assigned to images produced by `select` was wrong.	9 years ago
jim	faa50235d3	moved public methods to the top of classes	9 years ago
Jim Rybarski	f366f38009	resolves #114 . added index to Images to help with testing. Increased test coverage for filter()	9 years ago
jim	5196c7d2c7	#125 decoded much more metadata and also found pointers to XML data	9 years ago
jim	4943a854f1	resolves #123 : the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing)	9 years ago
jim	09173fcb9e	resolves #110 : added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening	9 years ago
jim	cc2a49ac6d	#110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index	9 years ago
Jim Rybarski	90ae0907de	resolves #106 : implemented missing method and added tests	9 years ago
Jim Rybarski	6b859bd7ba	updated docs, minor bug fixes, added unit tests	9 years ago
Jim Rybarski	2b2ad95a82	fixed syntax errors	9 years ago
Jim Rybarski	ac91d388c1	cleaned up a bit	9 years ago
jim	89d78030f1	#66 resolves v3 driver refactor	9 years ago
jim	45c148a1d3	#66 even more refactoring	9 years ago

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54 Commits (zolfariot-partialimages-draft)