nd2reader

Commit Graph

Author	SHA1	Message	Date
Lorenzo Zolfanelli	0a1988bc69	first messy roi loading modifications	3 years ago
Gabriele Girelli	e02dd3c2c1	Fixed missing filename path.	4 years ago
Gabriele Girelli	5fafcf1bb9	Update stitched.py	4 years ago
Gabriele Girelli	1a2bfffd9a	Fixed func def	4 years ago
Gabriele Girelli	b3421d5634	Refactored.	4 years ago
Gabriele Girelli	55627552d4	Using numpy assets when possible, and formatted with black	4 years ago
Gabriele Girelli	699e7105eb	Switched from warning to raising exception and improved message	4 years ago
Gabriele Girelli	613d86db85	Improved assert and warning messages	4 years ago
Gabriele Girelli	09dedf203d	Fixed new init method	4 years ago
Gabriele Girelli	fca6cb1c3b	Allowed for fh to be either str or IO, and formatted with black.	4 years ago
Gabriele Girelli	2a3c1a317e	Changed structure to check/remove method pair	4 years ago
Gabriele Girelli	db5d8e3fb8	Allowing case of multiple unwanted bytes per step	4 years ago
Gabriele Girelli	25f7e5f661	Complexity	4 years ago
Gabriele Girelli	72cf9fca5d	Update parser.py	4 years ago
Gabriele Girelli	b2a3b887ba	Complexity	4 years ago
Gabriele Girelli	27ed229f54	Fixed complexity	4 years ago
Gabriele Girelli	2daaa53a31	Regenerated Reader	4 years ago
Gabriele Girelli	2410545165	Fixed complexity	4 years ago
Gabriele Girelli	93949b3398	Removed empty bytes at channel subchunk ends Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).	4 years ago
Gabriele Girelli	5090f930d7	Update reader.py	4 years ago
Ruben Verweij	eeb4bd1063	Fix issue #34	4 years ago
Ruben Verweij	740b8b1112	Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate	4 years ago
Ruben Verweij	607c1e62ad	Fix error in loop handling	4 years ago
Gabriele Girelli	595978cda0	f-strings not supported by Python3.6-	4 years ago
Ruben Verweij	995d920e5f	Fix typo in z-level check	4 years ago
Ulugbek Abdullaev	538910ba01	add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading add an exception InvalidFileType add a test for the new behavior of ND2Reader constructor	5 years ago
Gabriele Girelli	1c6f517366	Removed self.__class__ from super() call	4 years ago
Ruben Verweij	4eea6a81a1	Version 3.2.3 due to build error of new version number storage system	4 years ago
Ruben Verweij	1d560969c6	New version 3.2.2	4 years ago
Gabriele Girelli	30cc7d74ed	Update raw_metadata.py	5 years ago
Gabriele Girelli	64679f9426	Update raw_metadata.py Changed isinstance to is. Fixed condition triggering warning.	5 years ago
Gabriele Girelli	b87b5f6697	Update raw_metadata.py	5 years ago
Gabriele Girelli	810682c667	Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch	5 years ago
Ruben Verweij	3c24672ebe	Resolve issue #24	5 years ago
Ruben Verweij	2a21784d62	Issue #24 : only return a Frame when bundle_axes is only y,x	5 years ago
Ruben Verweij	be1be6aefb	Update get_frame_vczyx function based on feedback in issue #24	5 years ago
Ruben Verweij	f83387ce04	Fixes issue #25 , adds unit tests and release 3.2.1	5 years ago
Ruben Verweij	2af560aa68	Fixes issue 25	5 years ago
Ruben Verweij	06de827ffc	Fix issue with bundle_axes and get_frame	5 years ago
Ruben Verweij	3f3464f239	Update version 3.2.0	5 years ago
unknown	d844144209	More informative warning if gap frames encountered and filled with np.nan	5 years ago
unknown	f07eab0160	Handle gap frames with np.nan-filled array and issue warning about it.	5 years ago
unknown	e9cd68bd44	removed NoImageError call, class def, and import references since now redundant	5 years ago
Ruben Verweij	9e0358882c	Add acquisition times to parser	5 years ago
Ruben Verweij	cd55b8ffdd	Fixes issue #11	5 years ago
Ruben Verweij	de1c2aff58	Fixes issue #16	5 years ago
Ruben Verweij	c92b78689d	Fallback function for old get_frame_2D function	5 years ago
unknown	ae00cc1223	fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master	5 years ago
Ruben Verweij	1d43617c55	Use _register_get_frame functions	5 years ago
Gregor Lichtner	ec080e48e8	added event names	5 years ago

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273 Commits (zolfariot-partialimages-draft)