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Jim Rybarski b7bc954248 Fixed bug where ND2s having only one channel couldn't be opened 10 years ago
.idea added setup 10 years ago
nd2reader Fixed bug where ND2s having only one channel couldn't be opened 10 years ago
tests sorta built new parser 10 years ago
.gitignore refactored a bit 10 years ago
LICENSE figured out timepoint counts, updated license 10 years ago
README.md Update README.md 10 years ago
setup.py fixed error where non-deleted fields of view woudn't work 10 years ago
tests.py sorta built new parser 10 years ago

README.md

nd2reader

Simple access to hierarchical .nd2 files

About

nd2reader is a pure-Python package that reads images produced by Nikon microscopes. Though it more or less works, it is currently under development and is not quite ready for use by the general public. Version 1.0 should be released in early 2015.

.nd2 files contain images and metadata, which can be split along multiple dimensions: time, fields of view (xy-axis), focus (z-axis), and filter channel. nd2reader allows you to view any subset of images based on any or all of these dimensions.

nd2reader holds data in numpy arrays, which makes it trivial to use with the image analysis packages scikit-image and OpenCV.

Dependencies

numpy

Installation

I'll write this eventually.