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83 lines
3.6 KiB
83 lines
3.6 KiB
from nd2reader.parser import Nd2Parser
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import unittest
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class MockNd2Parser(object):
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def __init__(self, channels, fields_of_view, z_levels):
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self.channels = channels
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self.fields_of_view = fields_of_view
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self.z_levels = z_levels
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class TestNd2Parser(unittest.TestCase):
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def test_calculate_field_of_view_simple(self):
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""" With a single field of view, the field of view should always be the same number (0). """
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nd2 = MockNd2Parser([''], [0], [0])
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for frame_number in range(1000):
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result = Nd2Parser._calculate_field_of_view(nd2, frame_number)
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self.assertEqual(result, 0)
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def test_calculate_field_of_view_two_channels(self):
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nd2 = MockNd2Parser(['', 'GFP'], [0], [0])
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for frame_number in range(1000):
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result = Nd2Parser._calculate_field_of_view(nd2, frame_number)
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self.assertEqual(result, 0)
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def test_calculate_field_of_view_three_channels(self):
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nd2 = MockNd2Parser(['', 'GFP', 'dsRed'], [0], [0])
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for frame_number in range(1000):
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result = Nd2Parser._calculate_field_of_view(nd2, frame_number)
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self.assertEqual(result, 0)
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def test_calculate_field_of_view_two_fovs(self):
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nd2 = MockNd2Parser([''], [0, 1], [0])
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for frame_number in range(1000):
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result = Nd2Parser._calculate_field_of_view(nd2, frame_number)
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self.assertEqual(result, frame_number % 2)
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def test_calculate_field_of_view_two_fovs_two_zlevels(self):
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nd2 = MockNd2Parser([''], [0, 1], [0, 1])
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 0), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 1), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 2), 1)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 3), 1)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 4), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 5), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 6), 1)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 7), 1)
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def test_calculate_field_of_view_two_everything(self):
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nd2 = MockNd2Parser(['', 'GFP'], [0, 1], [0, 1])
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 0), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 1), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 2), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 3), 0)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 4), 1)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 5), 1)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 6), 1)
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 7), 1)
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def test_calculate_field_of_view_7c2f2z(self):
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nd2 = MockNd2Parser(['', 'GFP', 'dsRed', 'dTomato', 'lulzBlue', 'jimbotronPurple', 'orange'], [0, 1], [0, 1])
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for i in range(14):
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 0)
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for i in range(14, 28):
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 1)
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for i in range(28, 42):
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 0)
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for i in range(42, 56):
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 1)
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for i in range(56, 70):
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 0)
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for i in range(70, 84):
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self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 1)
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def test_calculate_channel_simple(self):
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