from nd2reader.parser import Nd2Parser import unittest class MockNd2Parser(object): def __init__(self, channels, fields_of_view, z_levels): self.channels = channels self.fields_of_view = fields_of_view self.z_levels = z_levels class TestNd2Parser(unittest.TestCase): def test_calculate_field_of_view_simple(self): """ With a single field of view, the field of view should always be the same number (0). """ nd2 = MockNd2Parser([''], [0], [0]) for frame_number in range(1000): result = Nd2Parser._calculate_field_of_view(nd2, frame_number) self.assertEqual(result, 0) def test_calculate_field_of_view_two_channels(self): nd2 = MockNd2Parser(['', 'GFP'], [0], [0]) for frame_number in range(1000): result = Nd2Parser._calculate_field_of_view(nd2, frame_number) self.assertEqual(result, 0) def test_calculate_field_of_view_three_channels(self): nd2 = MockNd2Parser(['', 'GFP', 'dsRed'], [0], [0]) for frame_number in range(1000): result = Nd2Parser._calculate_field_of_view(nd2, frame_number) self.assertEqual(result, 0) def test_calculate_field_of_view_two_fovs(self): nd2 = MockNd2Parser([''], [0, 1], [0]) for frame_number in range(1000): result = Nd2Parser._calculate_field_of_view(nd2, frame_number) self.assertEqual(result, frame_number % 2) def test_calculate_field_of_view_two_fovs_two_zlevels(self): nd2 = MockNd2Parser([''], [0, 1], [0, 1]) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 0), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 1), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 2), 1) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 3), 1) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 4), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 5), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 6), 1) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 7), 1) def test_calculate_field_of_view_two_everything(self): nd2 = MockNd2Parser(['', 'GFP'], [0, 1], [0, 1]) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 0), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 1), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 2), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 3), 0) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 4), 1) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 5), 1) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 6), 1) self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, 7), 1) def test_calculate_field_of_view_7c2f2z(self): nd2 = MockNd2Parser(['', 'GFP', 'dsRed', 'dTomato', 'lulzBlue', 'jimbotronPurple', 'orange'], [0, 1], [0, 1]) for i in range(14): self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 0) for i in range(14, 28): self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 1) for i in range(28, 42): self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 0) for i in range(42, 56): self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 1) for i in range(56, 70): self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 0) for i in range(70, 84): self.assertEqual(Nd2Parser._calculate_field_of_view(nd2, i), 1) def test_calculate_channel_simple(self):