zolfa-nd2reader

Commit Graph

Author	SHA1	Message	Date
Zolfa	ffac15e083	added x coordiantes and rotation matrix readout	2 years ago
Zolfa	25ec773d1d	Minor changes for dev branched version release	3 years ago
Zolfa	f331c8fbcd	Add functions to read only rectangular regions.	3 years ago
Gabriele Girelli	0acc42eb66	Fixed missing filename path.	4 years ago
Gabriele Girelli	5a2d9ac764	Update stitched.py	4 years ago
Gabriele Girelli	e029f3c0b7	Fixed func def	4 years ago
Gabriele Girelli	165b8095c7	Refactored.	4 years ago
Gabriele Girelli	7cee1a70cc	Using numpy assets when possible, and formatted with black	4 years ago
Gabriele Girelli	2cd36638b1	Switched from warning to raising exception and improved message	4 years ago
Gabriele Girelli	e969424a63	Improved assert and warning messages	4 years ago
Gabriele Girelli	fdc10ca56e	Fixed new init method	4 years ago
Gabriele Girelli	0b8ae27dde	Allowed for fh to be either str or IO, and formatted with black.	4 years ago
Gabriele Girelli	1dd4827a6b	Changed structure to check/remove method pair	4 years ago
Gabriele Girelli	ee4b5ade59	Allowing case of multiple unwanted bytes per step	4 years ago
Gabriele Girelli	5763229496	Complexity	4 years ago
Gabriele Girelli	62c86f34e4	Update parser.py	4 years ago
Gabriele Girelli	e5d4eebd17	Complexity	4 years ago
Gabriele Girelli	460583ba14	Fixed complexity	4 years ago
Gabriele Girelli	b84b52d93d	Regenerated Reader	4 years ago
Gabriele Girelli	77016ccbaf	Fixed complexity	4 years ago
Gabriele Girelli	9b0b4b137a	Removed empty bytes at channel subchunk ends Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).	4 years ago
Gabriele Girelli	ce29f90f20	Update reader.py	4 years ago
Ruben Verweij	d0e4abcf55	Fix issue #34	4 years ago
Ruben Verweij	b496774361	Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate	4 years ago
Ruben Verweij	0a16ce9003	Fix error in loop handling	4 years ago
Gabriele Girelli	2508bef3e0	f-strings not supported by Python3.6-	4 years ago
Ruben Verweij	c54d37a606	Fix typo in z-level check	4 years ago
Ulugbek Abdullaev	1fc0389059	add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading add an exception InvalidFileType add a test for the new behavior of ND2Reader constructor	5 years ago
Gabriele Girelli	e011b578e6	Removed self.__class__ from super() call	4 years ago
Ruben Verweij	58d60ebf88	Version 3.2.3 due to build error of new version number storage system	5 years ago
Ruben Verweij	a92617a567	New version 3.2.2	5 years ago
Gabriele Girelli	5fd18220ef	Update raw_metadata.py	5 years ago
Gabriele Girelli	60dedbe71b	Update raw_metadata.py Changed isinstance to is. Fixed condition triggering warning.	5 years ago
Gabriele Girelli	6f27d14339	Update raw_metadata.py	5 years ago
Gabriele Girelli	96695d50ab	Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch	5 years ago
Ruben Verweij	0fd78a4175	Resolve issue #24	5 years ago
Ruben Verweij	9b205ca1da	Issue #24 : only return a Frame when bundle_axes is only y,x	5 years ago
Ruben Verweij	8b2f506990	Update get_frame_vczyx function based on feedback in issue #24	5 years ago
Ruben Verweij	d98e7acb71	Fixes issue #25 , adds unit tests and release 3.2.1	5 years ago
Ruben Verweij	afa38ea0e7	Fixes issue 25	5 years ago
Ruben Verweij	010073d24c	Fix issue with bundle_axes and get_frame	5 years ago
Ruben Verweij	14fb182e33	Update version 3.2.0	5 years ago
unknown	54fd7253b6	More informative warning if gap frames encountered and filled with np.nan	5 years ago
unknown	5d8fd312bc	Handle gap frames with np.nan-filled array and issue warning about it.	5 years ago
unknown	6649d577a8	removed NoImageError call, class def, and import references since now redundant	5 years ago
Ruben Verweij	94fa888c09	Add acquisition times to parser	5 years ago
Ruben Verweij	bd09f668a7	Fixes issue #11	5 years ago
Ruben Verweij	16cb8fb67f	Fixes issue #16	5 years ago
Ruben Verweij	b6aa323420	Fallback function for old get_frame_2D function	5 years ago
unknown	52e52b3616	fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master	5 years ago

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275 Commits (ffac15e0832980960a36da352a98767fcc935562)