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zolfa-nd2reader
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182 Commits (f5301c039d8c89446841aa91005141eae9ec4b03)

Author SHA1 Message Date
  jim 177530d657 #66 refactored init 9 years ago
  jim c096653a92 #66 interface refactoring is complete except for comments 9 years ago
  jim 949d0612d4 #66 began enormous refactor to support multiple versions of ND2s in an elegant way 9 years ago
  jim 55a3222e4f resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s. 9 years ago
  jim 86d2924d35 resolves #68: indexing was not returning the correct image and skipped frame entirely when there were multiple channels 9 years ago
  jim 74dc101776 resolves #77: fixes bug where an nd2 with a single cycle or z-level wouldn't work 9 years ago
  Jim Rybarski 49737f678f resolves #56 9 years ago
  jim 18bb3f5392 resolves #54: raises Index error when you go out of bounds 9 years ago
  jim 047af59a1a #42 many passing tests for calculate_channel 9 years ago
  jim 07e2297aaf #42 fixed dockerfile and makefile, got one passing test 9 years ago
  jim ae09b688b2 #42 refactored and tidied up a bit, created test files 9 years ago
  Jim Rybarski a40b243abb resolves #40: adds slicing semantics 9 years ago
  Jim Rybarski 454f5529fe #39 fixed image sets 9 years ago
  Jim Rybarski 89ddce3a7b resolves #39 9 years ago
  Jim Rybarski 0f9c6128e3 #39: field of view works 9 years ago
  Jim Rybarski e8cb08f4cc #39: calculating channel and z_level works right 9 years ago
  Jim Rybarski c9d3a82930 #39: getting individual images works, however, z_level and field of view are wrong 9 years ago
  Jim Rybarski 4c1a4a0330 resolves #45: implements the __len__ method 9 years ago
  Jim Rybarski 06d6a21586 resolves #37: Python 3 support! 9 years ago
  Jim Rybarski 8733b366d8 #39 9 years ago
  Jim Rybarski 095814450c #39 halfway implemented getitem. can you get non-cyclical field of view orders? if so that would invalidate this approach 9 years ago
  Jim Rybarski ebe9b854b6 resolves #43: removed unused NamedTuple 9 years ago
  Jim Rybarski 1a27e175c2 minor fixes regarding installation 9 years ago
  Jim Rybarski 5cd4076ec0 resolves #2 9 years ago
  Jim Rybarski fe32c62864 #2 finished cleaning up parser 9 years ago
  Jim Rybarski d5c8eb5cd1 #2 finished comments and cleanup of public interface 9 years ago
  Jim Rybarski e6471f5a1f #2 finished comments and cleanup of image and image set 9 years ago
  jim ffb3f43f7f #2 added reprs 10 years ago
  jim 2861d551cb #2 moved count methods to parser and fixed subtle bug in method that filtered out gap images 10 years ago
  Jim Rybarski 98391dc3c0 refactored the way images are validated 10 years ago
  Jim Rybarski 0dcb18ce00 changed log level 10 years ago
  Jim Rybarski a8a0d2a083 added repr 10 years ago
  Jim Rybarski 50a6de765b removed test lines 10 years ago
  Jim Rybarski 3d387a23c1 resolves #4 10 years ago
  Jim Rybarski 99c26b474f added makefile, simplified the Dockerfile 10 years ago
  jim 7b88c9104e fixed typos 10 years ago
  jim bc8afedcf9 resolves #23 - fixed bug due to improperly refactored logic condition 10 years ago
  jim 3c0e4a45f1 resolves #19 - more efficient checking of spacer images 10 years ago
  jim e995f4b6f4 resolves #16 removed scikit image reference, deleted obsolete files 10 years ago
  Jim Rybarski 9aadde5739 deleted unused method 10 years ago
  Jim Rybarski d06153fa0d much refactor. very change 10 years ago
  jim 46b1cdb933 #11 eliminated the messy parts of the parser, mostly 10 years ago
  jim 5930c63e51 #11 made parser section more readable 10 years ago
  Jim Rybarski de8915fd6b simplified even more 10 years ago
  Jim Rybarski 26ff38d039 created dockerfile 10 years ago
  Jim Rybarski c2cf7958e3 added requirements file 10 years ago
  jim 7fcf2a5740 #11 - partial refactor 10 years ago
  jim b5a84b8059 resolves #5: removed two unnecessary array typecasting operations 10 years ago
  jim c7cc838663 fixed absolute start and redid logging 10 years ago
  jim 719fe46f86 extract absolute start time of acquisition 10 years ago