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zolfa-nd2reader
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112 Commits (f366f3800910bb72593b18843a66b918d1f5b094)

Author SHA1 Message Date
  Jim Rybarski f366f38009 resolves #114. added index to Images to help with testing. Increased test coverage for filter() 9 years ago
  Jim Rybarski e141b0504c #114: wrote fast filter that works, but we need way more testing for corner cases 9 years ago
  Jim Rybarski 1268b2768c #125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile 9 years ago
  Jim Rybarski 1436068d4c #125: refactored to make adding more metadata easier 9 years ago
  jim 5196c7d2c7 #125 decoded much more metadata and also found pointers to XML data 9 years ago
  jim 4943a854f1 resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing) 9 years ago
  jim e9ff0915bf #123 switched to the new LabelMap object, added support for another metadata field 9 years ago
  jim 9548b92957 #123: created label map object, which parses the pointers to locations in the file where data is stored 9 years ago
  jim 09173fcb9e resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening 9 years ago
  jim cc2a49ac6d #110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index 9 years ago
  jim a102f6189b resolves #113: removed `.data` property from images now that they simply behave like numpy arrays 9 years ago
  jim 7c0c8be065 resolves #119: removed some commented-out code and an unused import 9 years ago
  jim fd3c67d65b resolves #112: removed ImageGroup object and image_sets method, as they were deprecated because of their general uselessness 9 years ago
  Jim Rybarski 90ae0907de resolves #106: implemented missing method and added tests 9 years ago
  Jim Rybarski 284f6775de resolves #103: ND2s with a single image could not be parsed properly as they do not contain any dimension data, so when absent we can assume a single frame exists 9 years ago
  jim 2e6611b027 #101: Shows the text "Created:" even if there is no creation date 9 years ago
  jim c3a3cbadd4 resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr 9 years ago
  Jim Rybarski 70467b9661 Added functional tests 9 years ago
  Jim Rybarski 6b859bd7ba updated docs, minor bug fixes, added unit tests 9 years ago
  Jim Rybarski 963310178d fixed merge conflict and docs 9 years ago
  Jim Rybarski d49c5f03eb #96: documentation changes 9 years ago
  Jim Rybarski a9ccdb19ce resolves #96: added context manager 9 years ago
  Jim Rybarski 2b2ad95a82 fixed syntax errors 9 years ago
  Jim Rybarski ac91d388c1 cleaned up a bit 9 years ago
  jim e55029c1de resolves #90 9 years ago
  jim 70e7f7a1b2 added data attribute back with deprecation warning 9 years ago
  jim 89d78030f1 #66 resolves v3 driver refactor 9 years ago
  jim 4ec54183d1 #66 fixed import problems 9 years ago
  jim 12512a5a1a #66 lol 9 years ago
  jim 45c148a1d3 #66 even more refactoring 9 years ago
  jim 544fd974eb #66 more refactoring 9 years ago
  jim 177530d657 #66 refactored init 9 years ago
  jim c096653a92 #66 interface refactoring is complete except for comments 9 years ago
  jim 949d0612d4 #66 began enormous refactor to support multiple versions of ND2s in an elegant way 9 years ago
  jim 55a3222e4f resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s. 9 years ago
  jim 86d2924d35 resolves #68: indexing was not returning the correct image and skipped frame entirely when there were multiple channels 9 years ago
  jim 74dc101776 resolves #77: fixes bug where an nd2 with a single cycle or z-level wouldn't work 9 years ago
  Jim Rybarski 49737f678f resolves #56 10 years ago
  jim 18bb3f5392 resolves #54: raises Index error when you go out of bounds 10 years ago
  jim 047af59a1a #42 many passing tests for calculate_channel 10 years ago
  jim 07e2297aaf #42 fixed dockerfile and makefile, got one passing test 10 years ago
  jim ae09b688b2 #42 refactored and tidied up a bit, created test files 10 years ago
  Jim Rybarski a40b243abb resolves #40: adds slicing semantics 10 years ago
  Jim Rybarski 454f5529fe #39 fixed image sets 10 years ago
  Jim Rybarski 89ddce3a7b resolves #39 10 years ago
  Jim Rybarski 0f9c6128e3 #39: field of view works 10 years ago
  Jim Rybarski e8cb08f4cc #39: calculating channel and z_level works right 10 years ago
  Jim Rybarski c9d3a82930 #39: getting individual images works, however, z_level and field of view are wrong 10 years ago
  Jim Rybarski 4c1a4a0330 resolves #45: implements the __len__ method 10 years ago
  Jim Rybarski 06d6a21586 resolves #37: Python 3 support! 10 years ago