jim
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c3d7273dfa
|
resolves #143: we can now programatically access the width of pixels in microns
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9 years ago |
Jim Rybarski
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25c4ce7f78
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resolves #135. we're ready to publish version 2.0.0
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9 years ago |
Jim Rybarski
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f366f38009
|
resolves #114. added index to Images to help with testing. Increased test coverage for filter()
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9 years ago |
Jim Rybarski
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1268b2768c
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#125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile
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9 years ago |
Jim Rybarski
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1436068d4c
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#125: refactored to make adding more metadata easier
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9 years ago |
jim
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4943a854f1
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resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing)
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9 years ago |
jim
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e9ff0915bf
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#123 switched to the new LabelMap object, added support for another metadata field
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9 years ago |
jim
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9548b92957
|
#123: created label map object, which parses the pointers to locations in the file where data is stored
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9 years ago |
jim
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09173fcb9e
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resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening
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9 years ago |
jim
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a102f6189b
|
resolves #113: removed `.data` property from images now that they simply behave like numpy arrays
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9 years ago |
jim
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fd3c67d65b
|
resolves #112: removed ImageGroup object and image_sets method, as they were deprecated because of their general uselessness
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9 years ago |
jim
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c3a3cbadd4
|
resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr
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9 years ago |
Jim Rybarski
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70467b9661
|
Added functional tests
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9 years ago |
Jim Rybarski
|
6b859bd7ba
|
updated docs, minor bug fixes, added unit tests
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9 years ago |
jim
|
e55029c1de
|
resolves #90
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9 years ago |
jim
|
70e7f7a1b2
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added data attribute back with deprecation warning
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9 years ago |
jim
|
89d78030f1
|
#66 resolves v3 driver refactor
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9 years ago |
jim
|
45c148a1d3
|
#66 even more refactoring
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9 years ago |
jim
|
544fd974eb
|
#66 more refactoring
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9 years ago |
jim
|
c096653a92
|
#66 interface refactoring is complete except for comments
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9 years ago |
jim
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949d0612d4
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#66 began enormous refactor to support multiple versions of ND2s in an elegant way
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9 years ago |
jim
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55a3222e4f
|
resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s.
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9 years ago |
Jim Rybarski
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e6471f5a1f
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#2 finished comments and cleanup of image and image set
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10 years ago |
jim
|
ffb3f43f7f
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#2 added reprs
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10 years ago |
Jim Rybarski
|
98391dc3c0
|
refactored the way images are validated
|
10 years ago |
Jim Rybarski
|
3d387a23c1
|
resolves #4
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10 years ago |
Jim Rybarski
|
99c26b474f
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added makefile, simplified the Dockerfile
|
10 years ago |
jim
|
3c0e4a45f1
|
resolves #19 - more efficient checking of spacer images
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10 years ago |
jim
|
e995f4b6f4
|
resolves #16 removed scikit image reference, deleted obsolete files
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10 years ago |
Jim Rybarski
|
d06153fa0d
|
much refactor. very change
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10 years ago |
jim
|
7fcf2a5740
|
#11 - partial refactor
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10 years ago |
jim
|
b5a84b8059
|
resolves #5: removed two unnecessary array typecasting operations
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10 years ago |
jim
|
c7cc838663
|
fixed absolute start and redid logging
|
10 years ago |
jim
|
33a604b4e3
|
added field of view to image properties
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10 years ago |
jim
|
e7e2682949
|
added some properties to Image
|
10 years ago |
Jim Rybarski
|
0f836acb26
|
cleaned up a bit
|
10 years ago |
jim
|
0bd231086b
|
fixed indicies - I think they might vary depending on file so this could cause problems
|
10 years ago |
Jim Rybarski
|
872255c61c
|
sorta built new parser
|
10 years ago |
jim
|
b4878e28dc
|
made a test model just to figure out how to refactor things
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10 years ago |
jim
|
57940efae0
|
got image set iteration working
|
10 years ago |
jim
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4e23aa8f69
|
image validity test, iterator for all images
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10 years ago |
jim
|
31e53aae9f
|
figured out timepoint counts, updated license
|
10 years ago |
jim
|
9aed3cb623
|
refactored a bit
|
10 years ago |
jim
|
bf35675022
|
solved missing fields of view issue
|
10 years ago |