Ruben Verweij
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4d9bc03c44
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Resolve issue #24
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5 years ago |
unknown
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17881d60f1
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More informative warning if gap frames encountered and filled with np.nan
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5 years ago |
unknown
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43dbc61412
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Handle gap frames with np.nan-filled array and issue warning about it.
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5 years ago |
unknown
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da185df9cd
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removed NoImageError call, class def, and import references since now redundant
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5 years ago |
Ruben Verweij
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295ccf5e5b
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Add acquisition times to parser
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5 years ago |
unknown
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1fed0c1fb1
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fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master
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5 years ago |
Ruben Verweij
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faa495ecdb
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Use _register_get_frame functions
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6 years ago |
jbf81tb
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75f19554e4
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get_frame_2D fix
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6 years ago |
Ruben Verweij
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509979a2bc
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Fix error
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6 years ago |
Ruben Verweij
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2a807946da
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Workaround issue #6, fix unit test timesteps
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6 years ago |
Ruben Verweij
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dd87a37103
|
3.0.9
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7 years ago |
Ruben Verweij
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c2302092ab
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Extend unit tests
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8 years ago |
Ruben Verweij
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8c84fa6c17
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Fix imports of pims and release 3.0.4
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8 years ago |
Ruben Verweij
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3b65069ef3
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Issue #2: fix calculation of image group number when there is no z-axis
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8 years ago |
Ruben Verweij
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9696954baf
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Add test for Parser
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8 years ago |
Ruben Verweij
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480432df50
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Improve documentation
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8 years ago |
Ruben Verweij
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2f2f138f17
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docstrings
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8 years ago |
Ruben Verweij
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60378ad06f
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Cleanup docstrings to use google python docs
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8 years ago |
Ruben Verweij
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a56a7cc665
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Fix dtype at np.float64
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8 years ago |
Ruben Verweij
|
a716471131
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Small fixes
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8 years ago |
Ruben Verweij
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63a286d167
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Hopefully fix Python 2 import error
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8 years ago |
Ruben Verweij
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685afb16ab
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Rename exceptions
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8 years ago |
Ruben Verweij
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cb2c06f9a5
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Complete refactor
- use only one parser for v3 files
- merge some classes
- return metadata as raw metadata and dictionary
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8 years ago |
Jim Rybarski
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b80ed8c75b
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possible fix for weird problem resulting from having many exposure times
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9 years ago |
jim
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9bbbf7ba28
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resolves #140
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9 years ago |
Jim Rybarski
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343a39dd9d
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fixes #133. The index assigned to images produced by `select` was wrong.
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9 years ago |
jim
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faa50235d3
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moved public methods to the top of classes
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9 years ago |
Jim Rybarski
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f366f38009
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resolves #114. added index to Images to help with testing. Increased test coverage for filter()
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9 years ago |
jim
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5196c7d2c7
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#125 decoded much more metadata and also found pointers to XML data
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9 years ago |
jim
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4943a854f1
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resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing)
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9 years ago |
jim
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09173fcb9e
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resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening
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9 years ago |
jim
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cc2a49ac6d
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#110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index
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9 years ago |
Jim Rybarski
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90ae0907de
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resolves #106: implemented missing method and added tests
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9 years ago |
Jim Rybarski
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6b859bd7ba
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updated docs, minor bug fixes, added unit tests
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9 years ago |
Jim Rybarski
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2b2ad95a82
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fixed syntax errors
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9 years ago |
Jim Rybarski
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ac91d388c1
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cleaned up a bit
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9 years ago |
jim
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89d78030f1
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#66 resolves v3 driver refactor
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9 years ago |
jim
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45c148a1d3
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#66 even more refactoring
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9 years ago |
jim
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544fd974eb
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#66 more refactoring
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9 years ago |