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zolfa-nd2reader
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45 Commits (3b5b934ba211589e7dcd20e2a86c188419cecca9)

Author SHA1 Message Date
  jim a1d73157b4 #147: this mostly resolves the issue and I'm going to close it out with this patch, however, I'm not satisfied with the solution (taken from http://stackoverflow.com/questions/16805987/python-numpy-ndarray-subclasses-and-zero-rank-arrays). While this allows most numpy operations to work, you still can't do basic things like adding two Image objects (even though np.sum([[n[0], n[1]]]) will work). Hopefully no one will care or notice 9 years ago
  jim c3d7273dfa resolves #143: we can now programatically access the width of pixels in microns 9 years ago
  Jim Rybarski 25c4ce7f78 resolves #135. we're ready to publish version 2.0.0 9 years ago
  Jim Rybarski f366f38009 resolves #114. added index to Images to help with testing. Increased test coverage for filter() 9 years ago
  Jim Rybarski 1268b2768c #125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile 9 years ago
  Jim Rybarski 1436068d4c #125: refactored to make adding more metadata easier 9 years ago
  jim 4943a854f1 resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing) 9 years ago
  jim e9ff0915bf #123 switched to the new LabelMap object, added support for another metadata field 9 years ago
  jim 9548b92957 #123: created label map object, which parses the pointers to locations in the file where data is stored 9 years ago
  jim 09173fcb9e resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening 9 years ago
  jim a102f6189b resolves #113: removed `.data` property from images now that they simply behave like numpy arrays 9 years ago
  jim fd3c67d65b resolves #112: removed ImageGroup object and image_sets method, as they were deprecated because of their general uselessness 9 years ago
  jim c3a3cbadd4 resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr 9 years ago
  Jim Rybarski 70467b9661 Added functional tests 9 years ago
  Jim Rybarski 6b859bd7ba updated docs, minor bug fixes, added unit tests 9 years ago
  jim e55029c1de resolves #90 9 years ago
  jim 70e7f7a1b2 added data attribute back with deprecation warning 9 years ago
  jim 89d78030f1 #66 resolves v3 driver refactor 9 years ago
  jim 45c148a1d3 #66 even more refactoring 9 years ago
  jim 544fd974eb #66 more refactoring 9 years ago
  jim c096653a92 #66 interface refactoring is complete except for comments 9 years ago
  jim 949d0612d4 #66 began enormous refactor to support multiple versions of ND2s in an elegant way 9 years ago
  jim 55a3222e4f resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s. 9 years ago
  Jim Rybarski e6471f5a1f #2 finished comments and cleanup of image and image set 10 years ago
  jim ffb3f43f7f #2 added reprs 10 years ago
  Jim Rybarski 98391dc3c0 refactored the way images are validated 10 years ago
  Jim Rybarski 3d387a23c1 resolves #4 10 years ago
  Jim Rybarski 99c26b474f added makefile, simplified the Dockerfile 10 years ago
  jim 3c0e4a45f1 resolves #19 - more efficient checking of spacer images 10 years ago
  jim e995f4b6f4 resolves #16 removed scikit image reference, deleted obsolete files 10 years ago
  Jim Rybarski d06153fa0d much refactor. very change 10 years ago
  jim 7fcf2a5740 #11 - partial refactor 10 years ago
  jim b5a84b8059 resolves #5: removed two unnecessary array typecasting operations 10 years ago
  jim c7cc838663 fixed absolute start and redid logging 10 years ago
  jim 33a604b4e3 added field of view to image properties 10 years ago
  jim e7e2682949 added some properties to Image 10 years ago
  Jim Rybarski 0f836acb26 cleaned up a bit 10 years ago
  jim 0bd231086b fixed indicies - I think they might vary depending on file so this could cause problems 10 years ago
  Jim Rybarski 872255c61c sorta built new parser 10 years ago
  jim b4878e28dc made a test model just to figure out how to refactor things 10 years ago
  jim 57940efae0 got image set iteration working 10 years ago
  jim 4e23aa8f69 image validity test, iterator for all images 10 years ago
  jim 31e53aae9f figured out timepoint counts, updated license 10 years ago
  jim 9aed3cb623 refactored a bit 10 years ago
  jim bf35675022 solved missing fields of view issue 10 years ago