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zolfa-nd2reader
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4 Commits (12512a5a1a3fa7a77efeb6afb1f84d3f380d3dac)

Author SHA1 Message Date
  jim 544fd974eb #66 more refactoring 9 years ago
  jim 177530d657 #66 refactored init 9 years ago
  jim c096653a92 #66 interface refactoring is complete except for comments 9 years ago
  jim 949d0612d4 #66 began enormous refactor to support multiple versions of ND2s in an elegant way 9 years ago
  jim 55a3222e4f resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s. 9 years ago
  jim 86d2924d35 resolves #68: indexing was not returning the correct image and skipped frame entirely when there were multiple channels 9 years ago
  Jim Rybarski 49737f678f resolves #56 10 years ago
  jim 18bb3f5392 resolves #54: raises Index error when you go out of bounds 10 years ago
  jim 07e2297aaf #42 fixed dockerfile and makefile, got one passing test 10 years ago
  jim ae09b688b2 #42 refactored and tidied up a bit, created test files 10 years ago
  Jim Rybarski a40b243abb resolves #40: adds slicing semantics 10 years ago
  Jim Rybarski 454f5529fe #39 fixed image sets 10 years ago
  Jim Rybarski 89ddce3a7b resolves #39 10 years ago
  Jim Rybarski 0f9c6128e3 #39: field of view works 10 years ago
  Jim Rybarski e8cb08f4cc #39: calculating channel and z_level works right 10 years ago
  Jim Rybarski c9d3a82930 #39: getting individual images works, however, z_level and field of view are wrong 10 years ago
  Jim Rybarski 4c1a4a0330 resolves #45: implements the __len__ method 10 years ago
  Jim Rybarski 06d6a21586 resolves #37: Python 3 support! 10 years ago
  Jim Rybarski 8733b366d8 #39 10 years ago
  Jim Rybarski 095814450c #39 halfway implemented getitem. can you get non-cyclical field of view orders? if so that would invalidate this approach 10 years ago
  Jim Rybarski fe32c62864 #2 finished cleaning up parser 10 years ago
  Jim Rybarski d5c8eb5cd1 #2 finished comments and cleanup of public interface 10 years ago
  jim ffb3f43f7f #2 added reprs 10 years ago
  jim 2861d551cb #2 moved count methods to parser and fixed subtle bug in method that filtered out gap images 10 years ago
  Jim Rybarski 98391dc3c0 refactored the way images are validated 10 years ago
  Jim Rybarski 0dcb18ce00 changed log level 10 years ago
  Jim Rybarski a8a0d2a083 added repr 10 years ago
  Jim Rybarski 50a6de765b removed test lines 10 years ago
  Jim Rybarski 3d387a23c1 resolves #4 10 years ago
  jim 7b88c9104e fixed typos 10 years ago
  Jim Rybarski 9aadde5739 deleted unused method 10 years ago
  Jim Rybarski d06153fa0d much refactor. very change 10 years ago
  Jim Rybarski de8915fd6b simplified even more 10 years ago
  Jim Rybarski c2cf7958e3 added requirements file 10 years ago
  jim 7fcf2a5740 #11 - partial refactor 10 years ago
  jim c7cc838663 fixed absolute start and redid logging 10 years ago
  Jim Rybarski 01783026f8 force three zoom levels 10 years ago
  jim 4c894fb21f refactored a bit 10 years ago
  jim 19b5ae5221 made some attributes public 10 years ago
  jim b4878e28dc made a test model just to figure out how to refactor things 10 years ago
  jim 57940efae0 got image set iteration working 10 years ago
  jim 4e23aa8f69 image validity test, iterator for all images 10 years ago
  jim 31e53aae9f figured out timepoint counts, updated license 10 years ago
  jim 9aed3cb623 refactored a bit 10 years ago
  jim 3b53a74f65 don't show cropped channels 10 years ago
  jim bf35675022 solved missing fields of view issue 10 years ago
  jim 14d916bc96 really got images now, code so shitty tho 10 years ago
  jim 2e9b558b15 got images sorta working again 10 years ago
  Jim Rybarski d0401fd8e4 identified some metadata to extract 10 years ago
  Jim Rybarski 5fd09ca2bd reads chunks 10 years ago