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zolfa-nd2reader
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523 Commits
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204 MiB
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46 Commits (0acc42eb66226028f42ab80b76795513edbfec20)

Author SHA1 Message Date
  Gabriele Girelli 0acc42eb66 Fixed missing filename path. 4 years ago
  Gabriele Girelli fdc10ca56e Fixed new init method 4 years ago
  Gabriele Girelli 0b8ae27dde Allowed for fh to be either str or IO, and formatted with black. 4 years ago
  Gabriele Girelli b84b52d93d Regenerated Reader 4 years ago
  Gabriele Girelli 77016ccbaf Fixed complexity 4 years ago
  Gabriele Girelli ce29f90f20 Update reader.py 4 years ago
  Ruben Verweij b496774361 Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate 4 years ago
  Gabriele Girelli 2508bef3e0 f-strings not supported by Python3.6- 4 years ago
  Ulugbek Abdullaev 1fc0389059 add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading 5 years ago
  Gabriele Girelli e011b578e6 Removed self.__class__ from super() call 4 years ago
  Ruben Verweij 0fd78a4175 Resolve issue #24 5 years ago
  Ruben Verweij 9b205ca1da Issue #24: only return a Frame when bundle_axes is only y,x 5 years ago
  Ruben Verweij 8b2f506990 Update get_frame_vczyx function based on feedback in issue #24 5 years ago
  Ruben Verweij afa38ea0e7 Fixes issue 25 5 years ago
  Ruben Verweij 010073d24c Fix issue with bundle_axes and get_frame 5 years ago
  Ruben Verweij b6aa323420 Fallback function for old get_frame_2D function 5 years ago
  Ruben Verweij 8f8a3aff1e Use _register_get_frame functions 5 years ago
  Gregor Lichtner bf30f9dee1 added image events to parser 5 years ago
  jbf81tb 1fe728a52c get_frame_2D fix 5 years ago
  Ruben Verweij 97846ac6b1 Fix fps calculation 5 years ago
  Ruben Verweij 1311e2df58 Fix to take into account real acquisition times when calculating framerate instead of the set interval (which is sometimes inaccurate) 6 years ago
  Ruben Verweij 25e4bafd99 New release 6 years ago
  Ruben Verweij 53163826a3 Fix #4 6 years ago
  Ruben Verweij fbdb5a8a55 Version 3.0.6: Add FOV support 7 years ago
  Ruben Verweij 6511f7d82a Test legacy Nd2, parser, reader fixes 7 years ago
  Ruben Verweij 589345ebac Add a class priority so this reader will be loaded before the Bioformats reader 7 years ago
  Ruben Verweij 6128ba4838 Fix imports of pims and release 3.0.4 7 years ago
  Ruben Verweij cbdec0fdc9 Cache timesteps and add frame rate property 7 years ago
  Ruben Verweij 9f96d23988 Always set 't' axis 7 years ago
  Ruben Verweij 9c957a1d0a Only setup certain axes if size > 1 7 years ago
  Ruben Verweij d4e505779d Issue #2: clean up axes handling, guess a better default axis 7 years ago
  Ruben Verweij 80a6e51a77 Fix issue #2 by following PIMS conventions more closely 7 years ago
  Ruben Verweij 45674ff241 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention 7 years ago
  Ruben Verweij 107c05293d Fix the number of frames 7 years ago
  Ruben Verweij 480e231d17 Bump version number to reflect api changes 7 years ago
  Ruben Verweij cfd6b93cca New documentation 7 years ago
  Ruben Verweij b0f22eb83b Very basic Reader test 7 years ago
  Ruben Verweij 6d1fd6d243 Provide backwards compatibility with old 2.1.3 version 7 years ago
  Ruben Verweij f3d5c62042 Improve documentation 7 years ago
  Ruben Verweij dab0b4aca8 docstrings 7 years ago
  Ruben Verweij 5f863a3ca5 Cleanup docstrings to use google python docs 7 years ago
  Ruben Verweij 00cc869497 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 7 years ago
  Ruben Verweij c2e48e36db Add ability to bundle the color axis 7 years ago
  Ruben Verweij 3b07b58d01 Add ability to bundle the color axis 7 years ago
  Ruben Verweij bd10811aee Add unit tests for opening files and axis sizes 7 years ago
  Ruben Verweij a716471131 Small fixes 7 years ago
  Ruben Verweij 63a286d167 Hopefully fix Python 2 import error 7 years ago
  Ruben Verweij 685afb16ab Rename exceptions 7 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 7 years ago
  Ruben Verweij d19a9c305b Refactor, add metadata to Frame objects, support PIMS open function 7 years ago