zolfa
/
zolfa-nd2reader
1
0
Fork 0
Code Issues 0 Pull Requests 0 Projects 0 Releases 0 Wiki Activity
548 Commits
3 Branches
204 MiB
Branch: master
Branches Tags
${ item.name }
Create branch ${ searchTerm }
from 'master'
${ noResults }
Commit Graph

1 Commits (master)

Author SHA1 Message Date
  Zolfa 2786c9ffe1 prepare hard fork 1 year ago
  Zolfa ffac15e083 added x coordiantes and rotation matrix readout 2 years ago
  Zolfa 25ec773d1d Minor changes for dev branched version release 3 years ago
  Zolfa f331c8fbcd Add functions to read only rectangular regions. 3 years ago
  Gabriele Girelli 165b8095c7 Refactored. 4 years ago
  Gabriele Girelli 7cee1a70cc Using numpy assets when possible, and formatted with black 4 years ago
  Gabriele Girelli 2cd36638b1 Switched from warning to raising exception and improved message 4 years ago
  Gabriele Girelli e969424a63 Improved assert and warning messages 4 years ago
  Gabriele Girelli 1dd4827a6b Changed structure to check/remove method pair 4 years ago
  Gabriele Girelli ee4b5ade59 Allowing case of multiple unwanted bytes per step 4 years ago
  Gabriele Girelli 5763229496 Complexity 4 years ago
  Gabriele Girelli 62c86f34e4 Update parser.py 4 years ago
  Gabriele Girelli e5d4eebd17 Complexity 4 years ago
  Gabriele Girelli 460583ba14 Fixed complexity 4 years ago
  Gabriele Girelli 9b0b4b137a Removed empty bytes at channel subchunk ends 4 years ago
  Ruben Verweij 0fd78a4175 Resolve issue #24 5 years ago
  unknown 54fd7253b6 More informative warning if gap frames encountered and filled with np.nan 5 years ago
  unknown 5d8fd312bc Handle gap frames with np.nan-filled array and issue warning about it. 5 years ago
  unknown 6649d577a8 removed NoImageError call, class def, and import references since now redundant 5 years ago
  Ruben Verweij 94fa888c09 Add acquisition times to parser 5 years ago
  unknown 52e52b3616 fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master 5 years ago
  Ruben Verweij 8f8a3aff1e Use _register_get_frame functions 5 years ago
  jbf81tb 1fe728a52c get_frame_2D fix 5 years ago
  Ruben Verweij 7b15150b64 Fix error 6 years ago
  Ruben Verweij 8e417fe2b2 Workaround issue #6, fix unit test timesteps 6 years ago
  Ruben Verweij 1607a24ba1 3.0.9 6 years ago
  Ruben Verweij 0187996815 Extend unit tests 7 years ago
  Ruben Verweij 6128ba4838 Fix imports of pims and release 3.0.4 7 years ago
  Ruben Verweij df7913e6b3 Issue #2: fix calculation of image group number when there is no z-axis 7 years ago
  Ruben Verweij cb7cb05f74 Add test for Parser 7 years ago
  Ruben Verweij f3d5c62042 Improve documentation 7 years ago
  Ruben Verweij dab0b4aca8 docstrings 7 years ago
  Ruben Verweij 5f863a3ca5 Cleanup docstrings to use google python docs 7 years ago
  Ruben Verweij a56a7cc665 Fix dtype at np.float64 7 years ago
  Ruben Verweij a716471131 Small fixes 7 years ago
  Ruben Verweij 63a286d167 Hopefully fix Python 2 import error 7 years ago
  Ruben Verweij 685afb16ab Rename exceptions 7 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 7 years ago
  Jim Rybarski b80ed8c75b possible fix for weird problem resulting from having many exposure times 8 years ago
  jim 9bbbf7ba28 resolves #140 9 years ago
  Jim Rybarski 343a39dd9d fixes #133. The index assigned to images produced by `select` was wrong. 9 years ago
  jim faa50235d3 moved public methods to the top of classes 9 years ago
  Jim Rybarski f366f38009 resolves #114. added index to Images to help with testing. Increased test coverage for filter() 9 years ago
  jim 5196c7d2c7 #125 decoded much more metadata and also found pointers to XML data 9 years ago
  jim 4943a854f1 resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing) 9 years ago
  jim 09173fcb9e resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening 9 years ago
  jim cc2a49ac6d #110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index 9 years ago
  Jim Rybarski 90ae0907de resolves #106: implemented missing method and added tests 9 years ago
  Jim Rybarski 6b859bd7ba updated docs, minor bug fixes, added unit tests 9 years ago
  Jim Rybarski 2b2ad95a82 fixed syntax errors 9 years ago