Commit Graph
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176cccdFix bug by 2017-03-02 13:46:46 +0100 -
0d3e07eFix path to test files by 2017-03-02 10:33:20 +0100 -
8f513fdAdd unit tests for opening files and axis sizes by 2017-03-01 14:28:44 +0100 -
481b2deFix gitignore file by 2017-03-01 12:09:23 +0100 -
fa0e0c9Parse part of ND experiment metadata by 2017-03-01 12:08:39 +0100 -
a56a7ccFix dtype at np.float64 by 2017-02-27 16:30:48 +0100 -
a716471Small fixes by 2017-02-17 15:20:09 +0100 -
1827fffAdd test for raw metadata by 2017-02-17 13:08:19 +0100 -
7761dabTest date parsing by 2017-02-17 12:29:55 +0100 -
ce1e2b5Report coverage by 2017-02-17 12:15:42 +0100 -
63a286dHopefully fix Python 2 import error by 2017-02-17 12:07:46 +0100 -
685afb1Rename exceptions by 2017-02-17 11:48:59 +0100 -
2bec3dbCorrectly install coverage module by 2017-02-17 11:43:01 +0100 -
630afa4Add code coverage info by 2017-02-17 11:39:41 +0100 -
7c779b3Small refactor of common functions by 2017-02-17 11:27:32 +0100 -
cb2c06fComplete refactor - use only one parser for v3 files - merge some classes - return metadata as raw metadata and dictionary by 2017-02-17 11:19:14 +0100 -
6f151e8Reduce code complexity by 2017-02-16 16:36:50 +0100 -
77d8869Add codeclimate integration by 2017-02-16 16:07:06 +0100 -
3ed8e24Travis: only support numpy supported Python versions by 2017-02-16 15:59:14 +0100 -
5f1477aAdd CI via Travis by 2017-02-16 15:53:37 +0100 -
d19a9c3Refactor, add metadata to Frame objects, support PIMS open function by 2017-02-16 15:46:07 +0100 -
7b7bf1aStart porting to PIMS framework, cleanup unnecessary files by 2017-02-15 17:33:42 +0100 -
4ffc0bdCorrectly scale ROI sizes and position by 2017-02-15 13:26:10 +0100 -
d0bb78fAdd ROI type and shape by 2017-02-15 12:05:25 +0100 -
6f800c4Added parsing for basic ROI metadata. by 2017-02-15 10:03:55 +0100 -
20c669cRebranding in anticipation of better metadata support (mainly for FRAP experiments). by 2017-02-14 17:05:42 +0100 -
883d0c1switch by 2016-04-14 18:31:01 -0500 -
8982825less harsh language by 2016-04-14 18:17:19 -0500 -
50c5b02Merge remote-tracking branch 'origin/master' by 2016-04-14 18:05:41 -0500 -
4cc1ef2I'm switching to Micro-Manager and never looking back. Goodbye nd2reader, it was great while it lasted. by 2016-04-14 18:05:22 -0500 -
340d74fdeleted CameraSettings since it's no longer used by 2016-03-30 11:19:42 -0500 -
b80ed8cpossible fix for weird problem resulting from having many exposure times by 2016-03-22 14:02:19 -0500 -
fd88da4Merge pull request #153 from jimrybarski/152-fix-array-wrap by 2016-02-23 15:25:06 -0600 -
4a48847resolves #152: images truly act like numpy arrays now and are also displayable by 2016-02-23 15:23:52 -0600 -
a916c48Merge pull request #151 from jimrybarski/150-remove-camera-settings by 2016-02-23 14:09:36 -0600 -
4194f07resolves #150, #149: removed camera settings entirely because they are buggy and terrible by 2016-02-23 14:03:49 -0600 -
e41d8ebfixed case by 2016-02-15 18:11:23 -0600 -
19c45edVersion 2.1.1 by 2016-02-15 18:06:21 -0600 -
b9ee522added some functional tests by 2016-02-15 18:02:38 -0600 -
3b5b934Merge pull request #148 from jimrybarski/147-more-numpylike-behavior by 2016-02-15 18:01:51 -0600 -
a1d7315#147: this mostly resolves the issue and I'm going to close it out with this patch, however, I'm not satisfied with the solution (taken from http://stackoverflow.com/questions/16805987/python-numpy-ndarray-subclasses-and-zero-rank-arrays). While this allows most numpy operations to work, you still can't do basic things like adding two Image objects (even though np.sum([[n[0], n[1]]]) will work). Hopefully no one will care or notice by 2016-02-15 17:32:47 -0600 -
8aaa453attempt to fix red highlighting by 2016-01-16 11:55:39 -0600 -
1313951Bump version to 2.1.0, updated documentation, removed skips from some unit tests by 2016-01-16 11:53:02 -0600 -
348cc64Merge pull request #146 from jimrybarski/132-range-for-select by 2016-01-16 10:45:57 -0600 -
e992f74resolves #132: The `select` method now allows you to specify a range of images to iterate over by 2016-01-16 10:43:24 -0600 -
6050db3Update CONTRIBUTING.md by 2016-01-09 13:16:16 -0600 -
a7ddaadbumped version to 2.0.2 by 2016-01-06 17:13:01 -0600 -
77475bbMerge pull request #144 from jimrybarski/143-find-pixel-size by 2016-01-06 17:09:43 -0600 -
7064e6f#143 discovered that humans can ruin everything by 2016-01-06 17:07:55 -0600 -
c3d7273resolves #143: we can now programatically access the width of pixels in microns by 2016-01-06 17:07:10 -0600 -
162e6aaUpdate CONTRIBUTING.md by 2016-01-06 15:02:36 -0600 -
4aa5a97bumped version to 2.0.1 by 2016-01-06 14:58:03 -0600 -
7233ff8added contact URL by 2016-01-06 14:52:33 -0600 -
eb2d704fix URL by 2016-01-06 14:51:33 -0600 -
fa5b407wrote contributing document by 2016-01-06 14:50:32 -0600 -
a5ecceeadded a few functional tests and fixed formatting by 2016-01-06 06:47:32 -0600 -
092eba2Merge pull request #142 from jimrybarski/140-some-files-unreadable by 2016-01-05 21:15:55 -0600 -
9bbbf7bresolves #140 by 2016-01-05 21:06:41 -0600 -
e1cd579Merge pull request #141 from jimrybarski/138-bug-select by 2016-01-05 06:56:18 -0600 -
629c086resolves #138 by 2016-01-05 06:53:48 -0600 -
0289234Potential fix for #138. Makes select() work with ND2s that have a single frame by iterating over a range of integers instead of the frames. by 2015-12-31 01:05:02 -0600 -
18e1addrevert versions to the way they were since it broke publishing, added unit test to ensure they're in sync by 2015-12-20 10:12:02 -0600 -
cd4feeaversion number is now set in exactly one place by 2015-12-20 10:03:25 -0600 -
68b987cMerge pull request #137 from jimrybarski/2.0 by 2015-12-20 09:53:30 -0600 -
52181a1remembered a fix to add to the changelog by 2015-12-20 09:50:04 -0600 -
1dab7e4Merge pull request #136 from jimrybarski/135-tidy-up-for-publication by 2015-12-20 09:45:46 -0600 -
25c4ce7resolves #135. we're ready to publish version 2.0.0 by 2015-12-20 09:44:08 -0600 -
ad9cdcdMerge pull request #134 from jimrybarski/133-index-error by 2015-12-12 21:54:36 -0600 -
343a39dfixes #133. The index assigned to images produced by `select` was wrong. by 2015-12-12 21:52:17 -0600 -
038d4e8Merge pull request #131 from jimrybarski/115-doi by 2015-12-07 17:53:07 -0600 -
f1569a4#115 updated issue text by 2015-12-07 17:48:27 -0600 -
95dc4f5#115 changed title by 2015-12-07 17:46:34 -0600 -
10ceab3#115 added DOI by 2015-12-07 17:46:01 -0600 -
faa5023moved public methods to the top of classes by 2015-12-06 22:55:39 -0600 -
4ccf775Merge pull request #130 from jimrybarski/129-rename-filter by 2015-12-06 22:52:25 -0600 -
47966b7resolves #129: renamed filter() to select() by 2015-12-05 16:41:09 -0600 -
7f359baupdated docs, fixed typos by 2015-12-04 20:50:11 -0600 -
001780bMerge pull request #128 from jimrybarski/117-xml by 2015-12-04 20:26:24 -0600 -
aedfa92resolves #117. The XML-formatted strings in a few raw_metadata are now parsed into OrderedDicts. This isn't exposed to the user but if we want to add any of the data it will be more convenient for contributors to examine the contents of the data by 2015-12-04 20:09:19 -0600 -
c697efbadded python2.7 virtualenv to gitignore by 2015-12-04 09:15:42 -0600 -
482a30abumped version number to 2.0.0 by 2015-12-04 09:10:17 -0600 -
8f24b13Merge pull request #127 from jimrybarski/114-fast-filter by 2015-12-04 09:06:45 -0600 -
f366f38resolves #114. added index to Images to help with testing. Increased test coverage for filter() by 2015-12-04 09:04:02 -0600 -
e141b05#114: wrote fast filter that works, but we need way more testing for corner cases by 2015-12-04 00:15:43 -0600 -
bda7af4Merge pull request #126 from jimrybarski/125-more-metadata by 2015-12-02 23:57:55 -0600 -
f256a3aresolves #125 by 2015-12-02 23:57:29 -0600 -
1b6b9ac#125: updated docs by 2015-12-02 23:50:51 -0600 -
2d8b340Merge branch '2.0' into 125-more-metadata by 2015-12-02 22:03:18 -0600 -
1268b27#125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile by 2015-12-02 22:03:03 -0600 -
04873eaMerge branch 'master' into 2.0 by 2015-11-27 12:34:05 -0600 -
e016c8emore consistent documentation by 2015-11-27 12:33:48 -0600 -
852a260reordered documentation by 2015-11-27 11:47:58 -0600 -
bd3725dfixed some typos by 2015-11-27 11:26:28 -0600 -
a1704c5made a few readme updates and clarified documentation by 2015-11-27 10:51:13 -0600 -
1436068#125: refactored to make adding more metadata easier by 2015-11-27 00:38:32 -0600 -
5196c7d#125 decoded much more metadata and also found pointers to XML data by 2015-11-23 19:30:40 -0600 -
947c7c1Merge pull request #124 from jimrybarski/123-expose-label-map by 2015-11-17 10:42:07 -0600 -
4943a85resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing) by 2015-11-17 10:41:07 -0600 -
e9ff091#123 switched to the new LabelMap object, added support for another metadata field by 2015-11-07 15:16:23 -0600 -
9548b92#123: created label map object, which parses the pointers to locations in the file where data is stored by 2015-11-07 11:24:02 -0600