jim
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cc2a49ac6d
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#110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index
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9 years ago |
jim
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a102f6189b
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resolves #113: removed `.data` property from images now that they simply behave like numpy arrays
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9 years ago |
jim
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7c0c8be065
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resolves #119: removed some commented-out code and an unused import
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9 years ago |
jim
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fd3c67d65b
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resolves #112: removed ImageGroup object and image_sets method, as they were deprecated because of their general uselessness
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9 years ago |
Jim Rybarski
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90ae0907de
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resolves #106: implemented missing method and added tests
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9 years ago |
Jim Rybarski
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284f6775de
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resolves #103: ND2s with a single image could not be parsed properly as they do not contain any dimension data, so when absent we can assume a single frame exists
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9 years ago |
jim
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2e6611b027
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#101: Shows the text "Created:" even if there is no creation date
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9 years ago |
jim
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c3a3cbadd4
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resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr
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9 years ago |
Jim Rybarski
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70467b9661
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Added functional tests
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9 years ago |
Jim Rybarski
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6b859bd7ba
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updated docs, minor bug fixes, added unit tests
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9 years ago |
Jim Rybarski
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963310178d
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fixed merge conflict and docs
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9 years ago |
Jim Rybarski
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d49c5f03eb
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#96: documentation changes
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9 years ago |
Jim Rybarski
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a9ccdb19ce
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resolves #96: added context manager
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9 years ago |
Jim Rybarski
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2b2ad95a82
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fixed syntax errors
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9 years ago |
Jim Rybarski
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ac91d388c1
|
cleaned up a bit
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9 years ago |
jim
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e55029c1de
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resolves #90
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9 years ago |
jim
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70e7f7a1b2
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added data attribute back with deprecation warning
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9 years ago |
jim
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89d78030f1
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#66 resolves v3 driver refactor
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9 years ago |
jim
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4ec54183d1
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#66 fixed import problems
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9 years ago |
jim
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12512a5a1a
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#66 lol
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9 years ago |
jim
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45c148a1d3
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#66 even more refactoring
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9 years ago |
jim
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544fd974eb
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#66 more refactoring
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9 years ago |
jim
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177530d657
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#66 refactored init
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9 years ago |
jim
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c096653a92
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#66 interface refactoring is complete except for comments
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9 years ago |
jim
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949d0612d4
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#66 began enormous refactor to support multiple versions of ND2s in an elegant way
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9 years ago |
jim
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55a3222e4f
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resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s.
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9 years ago |
jim
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86d2924d35
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resolves #68: indexing was not returning the correct image and skipped frame entirely when there were multiple channels
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9 years ago |
jim
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74dc101776
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resolves #77: fixes bug where an nd2 with a single cycle or z-level wouldn't work
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9 years ago |
Jim Rybarski
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49737f678f
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resolves #56
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10 years ago |
jim
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18bb3f5392
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resolves #54: raises Index error when you go out of bounds
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10 years ago |
jim
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047af59a1a
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#42 many passing tests for calculate_channel
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10 years ago |
jim
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07e2297aaf
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#42 fixed dockerfile and makefile, got one passing test
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10 years ago |
jim
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ae09b688b2
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#42 refactored and tidied up a bit, created test files
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10 years ago |
Jim Rybarski
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a40b243abb
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resolves #40: adds slicing semantics
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10 years ago |
Jim Rybarski
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454f5529fe
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#39 fixed image sets
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10 years ago |
Jim Rybarski
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89ddce3a7b
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resolves #39
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10 years ago |
Jim Rybarski
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0f9c6128e3
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#39: field of view works
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10 years ago |
Jim Rybarski
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e8cb08f4cc
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#39: calculating channel and z_level works right
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10 years ago |
Jim Rybarski
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c9d3a82930
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#39: getting individual images works, however, z_level and field of view are wrong
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10 years ago |
Jim Rybarski
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4c1a4a0330
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resolves #45: implements the __len__ method
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10 years ago |
Jim Rybarski
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06d6a21586
|
resolves #37: Python 3 support!
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10 years ago |
Jim Rybarski
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8733b366d8
|
#39
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10 years ago |
Jim Rybarski
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095814450c
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#39 halfway implemented getitem. can you get non-cyclical field of view orders? if so that would invalidate this approach
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10 years ago |
Jim Rybarski
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ebe9b854b6
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resolves #43: removed unused NamedTuple
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10 years ago |
Jim Rybarski
|
1a27e175c2
|
minor fixes regarding installation
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10 years ago |
Jim Rybarski
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5cd4076ec0
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resolves #2
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10 years ago |
Jim Rybarski
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fe32c62864
|
#2 finished cleaning up parser
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10 years ago |
Jim Rybarski
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d5c8eb5cd1
|
#2 finished comments and cleanup of public interface
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10 years ago |
Jim Rybarski
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e6471f5a1f
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#2 finished comments and cleanup of image and image set
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10 years ago |
jim
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ffb3f43f7f
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#2 added reprs
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10 years ago |