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242 Commits (c59aeea41815271004e98ed0ed365ac4fb7253b8)

Author SHA1 Message Date
  Ruben Verweij d943ee80b9 Unit testing: test the correct parsing of image_attributes 7 years ago
  Ruben Verweij 85e15ac86b Add a class priority so this reader will be loaded before the Bioformats reader 7 years ago
  Ruben Verweij 1e90e3a303 Add try/except blocks to make code more robust + fix unit tests 7 years ago
  Ruben Verweij 4acdf0cf55 Extend artificial to also write the label_map + data to file for more extensive unit testing 7 years ago
  Ruben Verweij 8c84fa6c17 Fix imports of pims and release 3.0.4 7 years ago
  Ruben Verweij d743d556ad Fix small bug when uiCount cannot be found 8 years ago
  Ruben Verweij 6a63a6f742 Version 3.0.3 8 years ago
  Ruben Verweij 39eada0948 Add a third method to determine the loop sampling interval 8 years ago
  Ruben Verweij 94e10dbe1f Cache timesteps and add frame rate property 8 years ago
  Ruben Verweij bce39c1acc Always set 't' axis 8 years ago
  Ruben Verweij a228fdbd9a Also get sampling interval when dAvgPeriodDiff is not set 8 years ago
  Ruben Verweij 5f77688aed Only setup certain axes if size > 1 8 years ago
  Ruben Verweij f4ee6b923e Update version 3.0.2 8 years ago
  Ruben Verweij 3b65069ef3 Issue #2: fix calculation of image group number when there is no z-axis 8 years ago
  Ruben Verweij 16288909b9 Issue #2: clean up axes handling, guess a better default axis 8 years ago
  Ruben Verweij b7c60e3a27 Fix issue #2 by following PIMS conventions more closely 8 years ago
  Ruben Verweij 10c2589348 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention 8 years ago
  Ruben Verweij 93446019ed version 3.0.1: Include LICENSE via MANIFEST.in for conda forge 8 years ago
  Ruben Verweij f88965ce8d Fix the number of frames 8 years ago
  Ruben Verweij 17df7ed8a6 Add more unit test for common + fix possibly endless loop 8 years ago
  Ruben Verweij e5557b0073 Fix creating test file for unit tests 8 years ago
  Ruben Verweij 9d2188aa47 Bug fixes by testing different .nd2 files 8 years ago
  Ruben Verweij 0ba84df3f9 Bump version number to reflect api changes 8 years ago
  Ruben Verweij d4ae515e09 Extend unit tests 8 years ago
  Ruben Verweij a50b446373 Extend unit tests 8 years ago
  Ruben Verweij 2b0600ee09 Extend unit tests 8 years ago
  Ruben Verweij 2c121dc0ff New documentation 8 years ago
  Ruben Verweij aa7e05f1d2 Very basic Reader test 8 years ago
  Ruben Verweij 0a17948b39 Last test of LabelMap 8 years ago
  Ruben Verweij 4183bcc4d5 Code fixes 8 years ago
  Ruben Verweij 7a8733b04e Test the LabelMap 8 years ago
  Ruben Verweij 9696954baf Add test for Parser 8 years ago
  Ruben Verweij 03bfc09922 Add ArtificialND2 class to help in testing nd2 file reading and parsing 8 years ago
  Ruben Verweij c6e5a13a0d Provide backwards compatibility with old 2.1.3 version 8 years ago
  Ruben Verweij b7ff34def5 Cleanup documentation 8 years ago
  Ruben Verweij 480432df50 Improve documentation 8 years ago
  Ruben Verweij 2f2f138f17 docstrings 8 years ago
  Ruben Verweij 60378ad06f Cleanup docstrings to use google python docs 8 years ago
  Ruben Verweij 4841c09eb7 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 8 years ago
  Ruben Verweij 0ba13656de Add ability to bundle the color axis 8 years ago
  Ruben Verweij a398edf699 Add ability to bundle the color axis 8 years ago
  Ruben Verweij 176cccd61c Fix bug 8 years ago
  Ruben Verweij 8f513fde74 Add unit tests for opening files and axis sizes 8 years ago
  Ruben Verweij fa0e0c9a86 Parse part of ND experiment metadata 8 years ago
  Ruben Verweij a56a7cc665 Fix dtype at np.float64 8 years ago
  Ruben Verweij a716471131 Small fixes 8 years ago
  Ruben Verweij 63a286d167 Hopefully fix Python 2 import error 8 years ago
  Ruben Verweij 685afb16ab Rename exceptions 8 years ago
  Ruben Verweij 7c779b3a40 Small refactor of common functions 8 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 8 years ago