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58 Commits (7b7bf1ac25e69eb534cfbc40d71c12e71b0cc422)

Author SHA1 Message Date
  Ruben Verweij 7b7bf1ac25 Start porting to PIMS framework, cleanup unnecessary files 7 years ago
  jim 4a48847630 resolves #152: images truly act like numpy arrays now and are also displayable 8 years ago
  jim 4194f073dd resolves #150, #149: removed camera settings entirely because they are buggy and terrible 8 years ago
  jim 19c45ed952 Version 2.1.1 8 years ago
  Jim Rybarski 13139518b3 Bump version to 2.1.0, updated documentation, removed skips from some unit tests 8 years ago
  jim a7ddaadf39 bumped version to 2.0.2 8 years ago
  jim 4aa5a97e80 bumped version to 2.0.1 8 years ago
  Jim Rybarski 25c4ce7f78 resolves #135. we're ready to publish version 2.0.0 9 years ago
  jim 949d0612d4 #66 began enormous refactor to support multiple versions of ND2s in an elegant way 9 years ago
  jim 55a3222e4f resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s. 9 years ago
  jim 86d2924d35 resolves #68: indexing was not returning the correct image and skipped frame entirely when there were multiple channels 9 years ago
  Jim Rybarski 49737f678f resolves #56 9 years ago
  jim 18bb3f5392 resolves #54: raises Index error when you go out of bounds 9 years ago
  jim 07e2297aaf #42 fixed dockerfile and makefile, got one passing test 9 years ago
  jim ae09b688b2 #42 refactored and tidied up a bit, created test files 9 years ago
  Jim Rybarski a40b243abb resolves #40: adds slicing semantics 9 years ago
  Jim Rybarski 454f5529fe #39 fixed image sets 9 years ago
  Jim Rybarski 89ddce3a7b resolves #39 9 years ago
  Jim Rybarski 0f9c6128e3 #39: field of view works 9 years ago
  Jim Rybarski e8cb08f4cc #39: calculating channel and z_level works right 9 years ago
  Jim Rybarski c9d3a82930 #39: getting individual images works, however, z_level and field of view are wrong 9 years ago
  Jim Rybarski 4c1a4a0330 resolves #45: implements the __len__ method 9 years ago
  Jim Rybarski 06d6a21586 resolves #37: Python 3 support! 9 years ago
  Jim Rybarski 8733b366d8 #39 9 years ago
  Jim Rybarski 095814450c #39 halfway implemented getitem. can you get non-cyclical field of view orders? if so that would invalidate this approach 9 years ago
  Jim Rybarski fe32c62864 #2 finished cleaning up parser 9 years ago
  Jim Rybarski d5c8eb5cd1 #2 finished comments and cleanup of public interface 9 years ago
  jim ffb3f43f7f #2 added reprs 9 years ago
  jim 2861d551cb #2 moved count methods to parser and fixed subtle bug in method that filtered out gap images 9 years ago
  Jim Rybarski 98391dc3c0 refactored the way images are validated 9 years ago
  Jim Rybarski 0dcb18ce00 changed log level 9 years ago
  Jim Rybarski a8a0d2a083 added repr 9 years ago
  Jim Rybarski 50a6de765b removed test lines 9 years ago
  Jim Rybarski 3d387a23c1 resolves #4 9 years ago
  jim 7b88c9104e fixed typos 9 years ago
  Jim Rybarski 9aadde5739 deleted unused method 9 years ago
  Jim Rybarski d06153fa0d much refactor. very change 9 years ago
  Jim Rybarski de8915fd6b simplified even more 9 years ago
  Jim Rybarski c2cf7958e3 added requirements file 9 years ago
  jim 7fcf2a5740 #11 - partial refactor 9 years ago
  jim c7cc838663 fixed absolute start and redid logging 9 years ago
  Jim Rybarski 01783026f8 force three zoom levels 10 years ago
  jim 4c894fb21f refactored a bit 10 years ago
  jim 19b5ae5221 made some attributes public 10 years ago
  jim b4878e28dc made a test model just to figure out how to refactor things 10 years ago
  jim 57940efae0 got image set iteration working 10 years ago
  jim 4e23aa8f69 image validity test, iterator for all images 10 years ago
  jim 31e53aae9f figured out timepoint counts, updated license 10 years ago
  jim 9aed3cb623 refactored a bit 10 years ago
  jim 3b53a74f65 don't show cropped channels 10 years ago