Gabriele Girelli
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4f11f3f4d0
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Allowed for fh to be either str or IO, and formatted with black.
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4 years ago |
Gabriele Girelli
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59a99a8f0e
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Update reader.py
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4 years ago |
Ruben Verweij
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b50a006d29
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update Travis settings
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5 years ago |
Ruben Verweij
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10e080da78
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Fix issue #34
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5 years ago |
Ruben Verweij
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e309631c84
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Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
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5 years ago |
Ruben Verweij
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1b8b835332
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Fix error in loop handling
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5 years ago |
Ruben Verweij
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235070c658
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Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
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5 years ago |
Ulugbek Abdullaev
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8ccbb975c8
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Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
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5 years ago |
Gabriele Girelli
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90a4ffc747
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f-strings not supported by Python3.6-
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5 years ago |
Ruben Verweij
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94e028909c
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Fix typo in z-level check
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5 years ago |
Ulugbek Abdullaev
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9059a15781
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add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
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5 years ago |
Ruben Verweij
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e165788c14
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Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
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5 years ago |
Ruben Verweij
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8c6d77a11f
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Fix codeclimate integration
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5 years ago |
Ruben Verweij
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94b83cd5f0
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Update README.md
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5 years ago |
Ruben Verweij
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1cf084f7f2
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Remove support for Python < 3.5
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5 years ago |
Gabriele Girelli
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fe2bb5932c
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Removed self.__class__ from super() call
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5 years ago |
Ruben Verweij
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06c9c20ce1
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Version 3.2.3 due to build error of new version number storage system
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5 years ago |
Ruben Verweij
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0a48885fec
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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4a5965a457
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New version 3.2.2
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5 years ago |
Ruben Verweij
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6d64a66c4b
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Update release.txt
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5 years ago |
Ruben Verweij
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aa6a4fbc93
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Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
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5 years ago |
Ruben Verweij
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099d2d5dc1
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Create CODE_OF_CONDUCT.md
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5 years ago |
Ruben Verweij
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c59aeea418
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Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
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5 years ago |
Gabriele Girelli
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399b42e383
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Update raw_metadata.py
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5 years ago |
Gabriele Girelli
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898dd09e14
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Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
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5 years ago |
Gabriele Girelli
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bec47a5fb6
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Update raw_metadata.py
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5 years ago |
Gabriele Girelli
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df1cf09e36
|
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
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5 years ago |
Ruben Verweij
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4d9bc03c44
|
Resolve issue #24
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5 years ago |
Ruben Verweij
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31f80554b1
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Issue #24: only return a Frame when bundle_axes is only y,x
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5 years ago |
Ruben Verweij
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dc9ae0bb98
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Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
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322969bceb
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Update get_frame_vczyx function based on feedback in issue #24
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5 years ago |
Ruben Verweij
|
8b56bed6e0
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Update release.txt
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5 years ago |
Ruben Verweij
|
0d533bfb96
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Make unit test less specific to accomodate for different versions of struct
|
5 years ago |
Ruben Verweij
|
8e0a642ed2
|
Fixes issue #25, adds unit tests and release 3.2.1
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5 years ago |
Ruben Verweij
|
38a0def075
|
Fixes issue 25
|
5 years ago |
Ruben Verweij
|
5f04a516fb
|
Merge branch 'master' of github.com:rbnvrw/nd2reader
|
5 years ago |
Ruben Verweij
|
54cce884c1
|
Fix issue with bundle_axes and get_frame
|
5 years ago |
Ruben Verweij
|
ac93bb5ad4
|
Update release.txt
|
5 years ago |
Ruben Verweij
|
52fc791eb7
|
Update version 3.2.0
|
5 years ago |
Ruben Verweij
|
74463f535c
|
Merge branch 'master' of github.com:rbnvrw/nd2reader
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5 years ago |
Ruben Verweij
|
09ed7a50d1
|
Version 3.2.0
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5 years ago |
Ruben Verweij
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c2f2e0c3e9
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Merge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master
Fix to allow reading of ND2-files with missing frames.
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5 years ago |
unknown
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17881d60f1
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More informative warning if gap frames encountered and filled with np.nan
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5 years ago |
unknown
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43dbc61412
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Handle gap frames with np.nan-filled array and issue warning about it.
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5 years ago |
unknown
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da185df9cd
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removed NoImageError call, class def, and import references since now redundant
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5 years ago |
Ruben Verweij
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295ccf5e5b
|
Add acquisition times to parser
|
5 years ago |
Ruben Verweij
|
38d6e8ce5a
|
Fixes issue #11
|
5 years ago |
Ruben Verweij
|
6dd7f9dfe2
|
Fixes issue #16
|
5 years ago |
Ruben Verweij
|
3e4845b309
|
Fallback function for old get_frame_2D function
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5 years ago |
unknown
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1fed0c1fb1
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fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master
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5 years ago |