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175 Commits (16288909b991e7097e6fbde041c315c16f1b21f3)

Author SHA1 Message Date
  Ruben Verweij 16288909b9 Issue #2: clean up axes handling, guess a better default axis 8 years ago
  Ruben Verweij b7c60e3a27 Fix issue #2 by following PIMS conventions more closely 8 years ago
  Ruben Verweij 10c2589348 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention 8 years ago
  Ruben Verweij 93446019ed version 3.0.1: Include LICENSE via MANIFEST.in for conda forge 8 years ago
  Ruben Verweij f88965ce8d Fix the number of frames 8 years ago
  Ruben Verweij 17df7ed8a6 Add more unit test for common + fix possibly endless loop 8 years ago
  Ruben Verweij e5557b0073 Fix creating test file for unit tests 8 years ago
  Ruben Verweij 9d2188aa47 Bug fixes by testing different .nd2 files 8 years ago
  Ruben Verweij 0ba84df3f9 Bump version number to reflect api changes 8 years ago
  Ruben Verweij d4ae515e09 Extend unit tests 8 years ago
  Ruben Verweij a50b446373 Extend unit tests 8 years ago
  Ruben Verweij 2b0600ee09 Extend unit tests 8 years ago
  Ruben Verweij 2c121dc0ff New documentation 8 years ago
  Ruben Verweij aa7e05f1d2 Very basic Reader test 8 years ago
  Ruben Verweij 0a17948b39 Last test of LabelMap 8 years ago
  Ruben Verweij 4183bcc4d5 Code fixes 8 years ago
  Ruben Verweij 7a8733b04e Test the LabelMap 8 years ago
  Ruben Verweij 9696954baf Add test for Parser 8 years ago
  Ruben Verweij 03bfc09922 Add ArtificialND2 class to help in testing nd2 file reading and parsing 8 years ago
  Ruben Verweij c6e5a13a0d Provide backwards compatibility with old 2.1.3 version 8 years ago
  Ruben Verweij b7ff34def5 Cleanup documentation 8 years ago
  Ruben Verweij 480432df50 Improve documentation 8 years ago
  Ruben Verweij 2f2f138f17 docstrings 8 years ago
  Ruben Verweij 60378ad06f Cleanup docstrings to use google python docs 8 years ago
  Ruben Verweij 4841c09eb7 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 8 years ago
  Ruben Verweij 0ba13656de Add ability to bundle the color axis 8 years ago
  Ruben Verweij a398edf699 Add ability to bundle the color axis 8 years ago
  Ruben Verweij 176cccd61c Fix bug 8 years ago
  Ruben Verweij 8f513fde74 Add unit tests for opening files and axis sizes 8 years ago
  Ruben Verweij fa0e0c9a86 Parse part of ND experiment metadata 8 years ago
  Ruben Verweij a56a7cc665 Fix dtype at np.float64 8 years ago
  Ruben Verweij a716471131 Small fixes 8 years ago
  Ruben Verweij 63a286d167 Hopefully fix Python 2 import error 8 years ago
  Ruben Verweij 685afb16ab Rename exceptions 8 years ago
  Ruben Verweij 7c779b3a40 Small refactor of common functions 8 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 8 years ago
  Ruben Verweij 6f151e8701 Reduce code complexity 8 years ago
  Ruben Verweij d19a9c305b Refactor, add metadata to Frame objects, support PIMS open function 8 years ago
  Ruben Verweij 7b7bf1ac25 Start porting to PIMS framework, cleanup unnecessary files 8 years ago
  Ruben Verweij 4ffc0bdf85 Correctly scale ROI sizes and position 8 years ago
  Ruben Verweij d0bb78f67a Add ROI type and shape 8 years ago
  Ruben Verweij 6f800c49f6 Added parsing for basic ROI metadata. 8 years ago
  jim 340d74fb8e deleted CameraSettings since it's no longer used 9 years ago
  Jim Rybarski b80ed8c75b possible fix for weird problem resulting from having many exposure times 9 years ago
  jim 4a48847630 resolves #152: images truly act like numpy arrays now and are also displayable 9 years ago
  jim 4194f073dd resolves #150, #149: removed camera settings entirely because they are buggy and terrible 9 years ago
  jim 19c45ed952 Version 2.1.1 9 years ago
  jim a1d73157b4 #147: this mostly resolves the issue and I'm going to close it out with this patch, however, I'm not satisfied with the solution (taken from http://stackoverflow.com/questions/16805987/python-numpy-ndarray-subclasses-and-zero-rank-arrays). While this allows most numpy operations to work, you still can't do basic things like adding two Image objects (even though np.sum([[n[0], n[1]]]) will work). Hopefully no one will care or notice 9 years ago
  Jim Rybarski 13139518b3 Bump version to 2.1.0, updated documentation, removed skips from some unit tests 9 years ago
  Jim Rybarski e992f743c7 resolves #132: The `select` method now allows you to specify a range of images to iterate over 9 years ago