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resolves #2

zolfa-add_slices_loading
Jim Rybarski 10 years ago
parent
commit
5cd4076ec0
1 changed files with 3 additions and 3 deletions
  1. +3
    -3
      nd2reader/parser.py

+ 3
- 3
nd2reader/parser.py View File

@ -64,8 +64,8 @@ class Nd2Parser(object):
image_data = image_group_data[image_data_start::self._channel_count] image_data = image_group_data[image_data_start::self._channel_count]
# Skip images that are all zeros! This is important, since NIS Elements creates blank "gap" images if you # Skip images that are all zeros! This is important, since NIS Elements creates blank "gap" images if you
# don't have the same number of images each cycle. We discovered this because we only took GFP images every # don't have the same number of images each cycle. We discovered this because we only took GFP images every
# other cycle to reduce phototoxicity, but NIS Elements still allocated memory as if we were going to take them
# every cyle.
# other cycle to reduce phototoxicity, but NIS Elements still allocated memory as if we were going to take
# them every cycle.
if np.any(image_data): if np.any(image_data):
return timestamp, image_data return timestamp, image_data
return None return None
@ -137,7 +137,7 @@ class Nd2Parser(object):
Image data is interleaved for each image set. That is, if there are four images in a set, the first image Image data is interleaved for each image set. That is, if there are four images in a set, the first image
will consist of pixels 1, 5, 9, etc, the second will be pixels 2, 6, 10, and so forth. will consist of pixels 1, 5, 9, etc, the second will be pixels 2, 6, 10, and so forth.
:rtype: int
:rtype: dict
""" """
channel_offset = {} channel_offset = {}


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