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Jim Rybarski 3b57cb61d0 Merge pull request #10 from jimrybarski/7-bug-delete-idea 10 years ago
nd2reader fixed absolute start and redid logging 10 years ago
tests sorta built new parser 10 years ago
.gitignore refactored a bit 10 years ago
LICENSE figured out timepoint counts, updated license 10 years ago
README.md Update README.md 10 years ago
setup.py fixed absolute start and redid logging 10 years ago
tests.py sorta built new parser 10 years ago

README.md

nd2reader

Simple access to hierarchical .nd2 files

About

nd2reader is a pure-Python package that reads images produced by Nikon microscopes. Though it more or less works, it is currently under development and is not quite ready for use by the general public. Version 1.0 should be released in early 2015.

.nd2 files contain images and metadata, which can be split along multiple dimensions: time, fields of view (xy-axis), focus (z-axis), and filter channel. nd2reader allows you to view any subset of images based on any or all of these dimensions.

nd2reader holds data in numpy arrays, which makes it trivial to use with the image analysis packages scikit-image and OpenCV.

Dependencies

numpy

Installation

I'll write this eventually.