Jim Rybarski
|
a5ecceeebc
|
added a few functional tests and fixed formatting
|
9 years ago |
Jim Rybarski
|
092eba2a9c
|
Merge pull request #142 from jimrybarski/140-some-files-unreadable
resolves #140
|
9 years ago |
jim
|
9bbbf7ba28
|
resolves #140
|
9 years ago |
Jim Rybarski
|
e1cd579882
|
Merge pull request #141 from jimrybarski/138-bug-select
138 bug select
|
9 years ago |
Jim Rybarski
|
629c086d51
|
resolves #138
|
9 years ago |
Jim Rybarski
|
0289234391
|
Potential fix for #138. Makes select() work with ND2s that have a single frame by iterating over a range of integers instead of the frames.
|
9 years ago |
Jim Rybarski
|
18e1add3c8
|
revert versions to the way they were since it broke publishing, added unit test to ensure they're in sync
|
9 years ago |
Jim Rybarski
|
cd4feea3a6
|
version number is now set in exactly one place
|
9 years ago |
Jim Rybarski
|
68b987c31a
|
Merge pull request #137 from jimrybarski/2.0
2.0
|
9 years ago |
Jim Rybarski
|
52181a1ae1
|
remembered a fix to add to the changelog
|
9 years ago |
Jim Rybarski
|
1dab7e4e6f
|
Merge pull request #136 from jimrybarski/135-tidy-up-for-publication
resolves #135. we're ready to publish version 2.0.0
|
9 years ago |
Jim Rybarski
|
25c4ce7f78
|
resolves #135. we're ready to publish version 2.0.0
|
9 years ago |
Jim Rybarski
|
ad9cdcd2ad
|
Merge pull request #134 from jimrybarski/133-index-error
fixes #133. The index assigned to images produced by `select` was wrong.
|
9 years ago |
Jim Rybarski
|
343a39dd9d
|
fixes #133. The index assigned to images produced by `select` was wrong.
|
9 years ago |
Jim Rybarski
|
038d4e8bd6
|
Merge pull request #131 from jimrybarski/115-doi
115 doi
|
9 years ago |
jim
|
f1569a4292
|
#115 updated issue text
|
9 years ago |
jim
|
95dc4f5605
|
#115 changed title
|
9 years ago |
jim
|
10ceab358e
|
#115 added DOI
|
9 years ago |
jim
|
faa50235d3
|
moved public methods to the top of classes
|
9 years ago |
Jim Rybarski
|
4ccf77551d
|
Merge pull request #130 from jimrybarski/129-rename-filter
resolves #129: renamed filter() to select()
|
9 years ago |
Jim Rybarski
|
47966b75dd
|
resolves #129: renamed filter() to select()
|
9 years ago |
Jim Rybarski
|
7f359bacc1
|
updated docs, fixed typos
|
9 years ago |
Jim Rybarski
|
001780b699
|
Merge pull request #128 from jimrybarski/117-xml
resolves #117. The XML-formatted strings in a few raw_metadata are no…
|
9 years ago |
Jim Rybarski
|
aedfa921a5
|
resolves #117. The XML-formatted strings in a few raw_metadata are now parsed into OrderedDicts. This isn't exposed to the user but if we want to add any of the data it will be more convenient for contributors to examine the contents of the data
|
9 years ago |
Jim Rybarski
|
c697efb3fd
|
added python2.7 virtualenv to gitignore
|
9 years ago |
Jim Rybarski
|
482a30abd8
|
bumped version number to 2.0.0
|
9 years ago |
Jim Rybarski
|
8f24b139e0
|
Merge pull request #127 from jimrybarski/114-fast-filter
114 fast filter
|
9 years ago |
Jim Rybarski
|
f366f38009
|
resolves #114. added index to Images to help with testing. Increased test coverage for filter()
|
9 years ago |
Jim Rybarski
|
e141b0504c
|
#114: wrote fast filter that works, but we need way more testing for corner cases
|
9 years ago |
Jim Rybarski
|
bda7af4bdc
|
Merge pull request #126 from jimrybarski/125-more-metadata
125 more metadata
|
9 years ago |
Jim Rybarski
|
f256a3a03d
|
resolves #125
|
9 years ago |
Jim Rybarski
|
1b6b9ac84c
|
#125: updated docs
|
9 years ago |
Jim Rybarski
|
2d8b340806
|
Merge branch '2.0' into 125-more-metadata
|
9 years ago |
Jim Rybarski
|
1268b2768c
|
#125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile
|
9 years ago |
Jim Rybarski
|
04873ea9a5
|
Merge branch 'master' into 2.0
|
9 years ago |
Jim Rybarski
|
e016c8e321
|
more consistent documentation
|
9 years ago |
Jim Rybarski
|
852a26091c
|
reordered documentation
|
9 years ago |
Jim Rybarski
|
bd3725dc9b
|
fixed some typos
|
9 years ago |
Jim Rybarski
|
a1704c53cb
|
made a few readme updates and clarified documentation
|
9 years ago |
Jim Rybarski
|
1436068d4c
|
#125: refactored to make adding more metadata easier
|
9 years ago |
jim
|
5196c7d2c7
|
#125 decoded much more metadata and also found pointers to XML data
|
9 years ago |
Jim Rybarski
|
947c7c136e
|
Merge pull request #124 from jimrybarski/123-expose-label-map
123 expose label map
|
9 years ago |
jim
|
4943a854f1
|
resolves #123: the label map and raw metadata are now accessible, so we can more easily compare what they contain to the information in the XML (which we're still not parsing)
|
9 years ago |
jim
|
e9ff0915bf
|
#123 switched to the new LabelMap object, added support for another metadata field
|
9 years ago |
jim
|
9548b92957
|
#123: created label map object, which parses the pointers to locations in the file where data is stored
|
9 years ago |
Jim Rybarski
|
3bc9adcc77
|
Merge pull request #122 from jimrybarski/110-comments
110 comments
|
9 years ago |
jim
|
09173fcb9e
|
resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening
|
9 years ago |
jim
|
cc2a49ac6d
|
#110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index
|
9 years ago |
Jim Rybarski
|
037a87ac09
|
Merge pull request #121 from jimrybarski/113-remove-deprecated-function
resolves #113: removed `.data` property from images now that they sim…
|
9 years ago |
jim
|
a102f6189b
|
resolves #113: removed `.data` property from images now that they simply behave like numpy arrays
|
9 years ago |