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nd2reader
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47 Commits (0a1988bc69b397bab3c206aeb3b40275e825f81a)

Author SHA1 Message Date
  Lorenzo Zolfanelli 0a1988bc69 first messy roi loading modifications 3 years ago
  Gabriele Girelli e02dd3c2c1
Fixed missing filename path. 4 years ago
  Gabriele Girelli 09dedf203d Fixed new init method 4 years ago
  Gabriele Girelli fca6cb1c3b Allowed for fh to be either str or IO, and formatted with black. 4 years ago
  Gabriele Girelli 2daaa53a31
Regenerated Reader 4 years ago
  Gabriele Girelli 2410545165
Fixed complexity 4 years ago
  Gabriele Girelli 5090f930d7
Update reader.py 4 years ago
  Ruben Verweij 740b8b1112 Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate 4 years ago
  Gabriele Girelli 595978cda0
f-strings not supported by Python3.6- 4 years ago
  Ulugbek Abdullaev 538910ba01 add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading 5 years ago
  Gabriele Girelli 1c6f517366
Removed self.__class__ from super() call 4 years ago
  Ruben Verweij 3c24672ebe Resolve issue #24 5 years ago
  Ruben Verweij 2a21784d62 Issue #24: only return a Frame when bundle_axes is only y,x 5 years ago
  Ruben Verweij be1be6aefb Update get_frame_vczyx function based on feedback in issue #24 5 years ago
  Ruben Verweij 2af560aa68 Fixes issue 25 5 years ago
  Ruben Verweij 06de827ffc Fix issue with bundle_axes and get_frame 5 years ago
  Ruben Verweij c92b78689d Fallback function for old get_frame_2D function 5 years ago
  Ruben Verweij 1d43617c55 Use _register_get_frame functions 5 years ago
  Gregor Lichtner 47b009c151 added image events to parser 5 years ago
  jbf81tb 999424a88e get_frame_2D fix 5 years ago
  Ruben Verweij 37e6dfbac4 Fix fps calculation 5 years ago
  Ruben Verweij 121cf0b9fb Fix to take into account real acquisition times when calculating framerate instead of the set interval (which is sometimes inaccurate) 6 years ago
  Ruben Verweij a0b4119ac1 New release 7 years ago
  Ruben Verweij f5d9be60b8 Fix #4 7 years ago
  Ruben Verweij 3367707a2b Version 3.0.6: Add FOV support 7 years ago
  Ruben Verweij abeb67b39e Test legacy Nd2, parser, reader fixes 7 years ago
  Ruben Verweij d074c39638 Add a class priority so this reader will be loaded before the Bioformats reader 7 years ago
  Ruben Verweij 4d21e4bdb1 Fix imports of pims and release 3.0.4 7 years ago
  Ruben Verweij 40aa6c8e49 Cache timesteps and add frame rate property 7 years ago
  Ruben Verweij a305f4b66a Always set 't' axis 7 years ago
  Ruben Verweij 689b79c13f Only setup certain axes if size > 1 7 years ago
  Ruben Verweij aa842847bb Issue #2: clean up axes handling, guess a better default axis 7 years ago
  Ruben Verweij 26138af687 Fix issue #2 by following PIMS conventions more closely 7 years ago
  Ruben Verweij 0de328661f Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention 7 years ago
  Ruben Verweij 2298c82da4 Fix the number of frames 7 years ago
  Ruben Verweij 7bbdb0ec7c Bump version number to reflect api changes 7 years ago
  Ruben Verweij 760644d135 New documentation 7 years ago
  Ruben Verweij cbb1809a61 Very basic Reader test 7 years ago
  Ruben Verweij c6e5a13a0d Provide backwards compatibility with old 2.1.3 version 7 years ago
  Ruben Verweij 480432df50 Improve documentation 7 years ago
  Ruben Verweij 2f2f138f17 docstrings 7 years ago
  Ruben Verweij 60378ad06f Cleanup docstrings to use google python docs 7 years ago
  Ruben Verweij 4841c09eb7 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader 7 years ago
  Ruben Verweij 0ba13656de Add ability to bundle the color axis 7 years ago
  Ruben Verweij a398edf699 Add ability to bundle the color axis 7 years ago
  Ruben Verweij 8f513fde74 Add unit tests for opening files and axis sizes 7 years ago
  Ruben Verweij a716471131 Small fixes 7 years ago
  Ruben Verweij 63a286d167 Hopefully fix Python 2 import error 7 years ago
  Ruben Verweij 685afb16ab Rename exceptions 7 years ago
  Ruben Verweij cb2c06f9a5 Complete refactor 7 years ago