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Rebranding in anticipation of better metadata support (mainly for FRAP experiments).

feature/load_slices
Ruben Verweij 8 years ago
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      CONTRIBUTING.md
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CONTRIBUTING.md View File

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# Contributing to nd2reader # Contributing to nd2reader
We welcome feature proposals and improvements to the library from anyone. If you just have an idea, you can open an [issue](https://github.com/jimrybarski/nd2reader/issues) for
discussion, or get in touch with Jim Rybarski via email at jim@rybarski.com, or on Twitter at [@jimrybarski](https://twitter.com/jimrybarski). If you already wrote some code or made changes, simply open a pull
We welcome feature proposals and improvements to the library from anyone. If you just have an idea, you can open an [issue](https://github.com/rbnvrw/nd2reader/issues) for
discussion, or get in touch with Ruben Verweij. If you already wrote some code or made changes, simply open a pull
request. request.
## Running and Writing Tests ## Running and Writing Tests


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CONTRIBUTORS.txt View File

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Author: Jim Rybarski <jim@rybarski.com> Author: Jim Rybarski <jim@rybarski.com>
nd2reader is based on the read_nd2 module from the SLOTH library (http://pythonhosted.org/SLOTH/_modules/sloth/read_nd2.html). nd2reader is based on the read_nd2 module from the SLOTH library (http://pythonhosted.org/SLOTH/_modules/sloth/read_nd2.html).
Thanks to M.Kauer and B.Kauer for solving the hardest part of parsing ND2s.
Thanks to M.Kauer and B.Kauer for solving the hardest part of parsing ND2s.
This fork is maintained by Ruben Verweij.

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README.md View File

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# nd2reader # nd2reader
### Don't use this library, use Micro-Manager
I am no longer supporting this library, as my lab has discovered [Micro-Manager](https://micro-manager.org/) and found it to be a far superior application for acquiring microscope data. I would highly recommend switching if it works for what you're doing.
I will not be accepting pull requests any longer. If you find a bug, you can fork the repo and fix it yourself, or look for someone else's fork which may already contain a fix.
If you would like to take control of the nd2reader namespace on PyPI, please shoot me an email. I'm not going to just give it away but I will consider it for someone who produces a high-quality fork that's widely-used.
### About ### About
`nd2reader` is a pure-Python package that reads images produced by NIS Elements 4.0+. It has only been definitively tested on NIS Elements 4.30.02 Build 1053. Support for older versions is being actively worked on. `nd2reader` is a pure-Python package that reads images produced by NIS Elements 4.0+. It has only been definitively tested on NIS Elements 4.30.02 Build 1053. Support for older versions is being actively worked on.
@ -128,12 +121,12 @@ The `Nd2` object has some programmatically-accessible metadata:
### Contributing ### Contributing
If you'd like to help with the development of nd2reader or just have an idea for improvement, please see the [contributing](https://github.com/jimrybarski/nd2reader/blob/master/CONTRIBUTING.md) page
If you'd like to help with the development of nd2reader or just have an idea for improvement, please see the [contributing](https://github.com/rbnvrw/nd2reader/blob/master/CONTRIBUTING.md) page
for more information. for more information.
### Bug Reports and Features ### Bug Reports and Features
If this fails to work exactly as expected, please open an [issue](https://github.com/jimrybarski/nd2reader/issues).
If this fails to work exactly as expected, please open an [issue](https://github.com/rbnvrw/nd2reader/issues).
If you get an unhandled exception, please paste the entire stack trace into the issue as well. If you get an unhandled exception, please paste the entire stack trace into the issue as well.
### Citation ### Citation
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### Acknowledgments ### Acknowledgments
Support for the development of this package was provided by the [Finkelstein Laboratory](http://finkelsteinlab.org/).
Original version by Jim Rybarski. Support for the development of this package was provided by the [Finkelstein Laboratory](http://finkelsteinlab.org/).

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setup.py View File

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], ],
version=VERSION, version=VERSION,
description='A tool for reading ND2 files produced by NIS Elements', description='A tool for reading ND2 files produced by NIS Elements',
author='Jim Rybarski',
author_email='jim@rybarski.com',
url='https://github.com/jimrybarski/nd2reader',
download_url='https://github.com/jimrybarski/nd2reader/tarball/%s' % VERSION,
author='Ruben Verweij',
author_email='verweij@physics.leidenuniv.nl',
url='https://github.com/rbnvrw/nd2reader',
download_url='https://github.com/rbnvrw/nd2reader/tarball/%s' % VERSION,
keywords=['nd2', 'nikon', 'microscopy', 'NIS Elements'], keywords=['nd2', 'nikon', 'microscopy', 'NIS Elements'],
classifiers=['Development Status :: 5 - Production/Stable', classifiers=['Development Status :: 5 - Production/Stable',
'Intended Audience :: Science/Research', 'Intended Audience :: Science/Research',


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