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  1. # nd2reader
  2. ### About
  3. `nd2reader` is a pure-Python package that reads images produced by NIS Elements 4.0+. It has only been definitively tested on NIS Elements 4.30.02 Build 1053. Support for older versions is being actively worked on.
  4. The reader is written in the [pims](https://github.com/soft-matter/pims) framework, enabling easy access to multidimensional files, lazy slicing, and nice display in IPython.
  5. ### Installation
  6. If you don't already have the packages `numpy`, `pims`, `six` and `xmltodict`, they will be installed automatically if you use the `setup.py` script.
  7. `nd2reader` is an order of magnitude faster in Python 3. I recommend using it unless you have no other choice.
  8. ### ND2s
  9. `nd2reader` follows the [pims](https://github.com/soft-matter/pims) framework. To open a file:
  10. ```python
  11. from nd2reader import ND2Reader
  12. images = ND2Reader('my_directory/example.nd2')
  13. ```
  14. After opening the file, all `pims` features are supported. Please refer to the [documentation](http://soft-matter.github.io/pims/).
  15. ### Contributing
  16. If you'd like to help with the development of nd2reader or just have an idea for improvement, please see the [contributing](https://github.com/rbnvrw/nd2reader/blob/master/CONTRIBUTING.md) page
  17. for more information.
  18. ### Bug Reports and Features
  19. If this fails to work exactly as expected, please open an [issue](https://github.com/rbnvrw/nd2reader/issues).
  20. If you get an unhandled exception, please paste the entire stack trace into the issue as well.
  21. ### Acknowledgments
  22. PIMS modified version by Ruben Verweij.
  23. Original version by Jim Rybarski. Support for the development of this package was partially provided by the [Finkelstein Laboratory](http://finkelsteinlab.org/).