You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
 
 
 

769 B

Tutorial

Installation

If you don't already have the packages numpy, pims, six and xmltodict, they will be installed automatically if you use the setup.py script. nd2reader is an order of magnitude faster in Python 3. I recommend using it unless you have no other choice. Python 2.7 and Python >= 3.4 are supported.

Opening ND2s

nd2reader follows the pims framework. To open a file and show the first frame:

from nd2reader import ND2Reader
import matplotlib.pyplot as plt

with ND2Reader('my_directory/example.nd2') as images:
  plt.imshow(images[0])

After opening the file, all pims features are supported. Please refer to the pims documentation.