You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
89 lines
2.1 KiB
89 lines
2.1 KiB
class Metadata(object):
|
|
""" A simple container for ND2 metadata. """
|
|
def __init__(self, height, width, channels, date, fields_of_view, frames, z_levels, total_images_per_channel):
|
|
self._height = height
|
|
self._width = width
|
|
self._channels = channels
|
|
self._date = date
|
|
self._fields_of_view = fields_of_view
|
|
self._frames = frames
|
|
self._z_levels = z_levels
|
|
self._total_images_per_channel = total_images_per_channel
|
|
|
|
@property
|
|
def height(self):
|
|
"""
|
|
The image height in pixels.
|
|
|
|
:rtype: int
|
|
|
|
"""
|
|
return self._height
|
|
|
|
@property
|
|
def width(self):
|
|
"""
|
|
The image width in pixels.
|
|
|
|
:rtype: int
|
|
|
|
"""
|
|
return self._width
|
|
|
|
@property
|
|
def date(self):
|
|
"""
|
|
The date and time when acquisition began.
|
|
|
|
:rtype: datetime.datetime()
|
|
|
|
"""
|
|
return self._date
|
|
|
|
@property
|
|
def channels(self):
|
|
"""
|
|
These are labels created by the NIS Elements user. Typically they may a short description of the filter cube
|
|
used (e.g. "bright field", "GFP", etc.)
|
|
|
|
:rtype: list
|
|
|
|
"""
|
|
return self._channels
|
|
|
|
@property
|
|
def fields_of_view(self):
|
|
"""
|
|
The metadata contains information about fields of view, but it contains it even if some fields
|
|
of view were cropped. We can't find anything that states which fields of view are actually
|
|
in the image data, so we have to calculate it. There probably is something somewhere, since
|
|
NIS Elements can figure it out, but we haven't found it yet.
|
|
|
|
:rtype: list
|
|
|
|
"""
|
|
return self._fields_of_view
|
|
|
|
@property
|
|
def frames(self):
|
|
"""
|
|
The number of cycles.
|
|
|
|
:rtype: list
|
|
|
|
"""
|
|
return self._frames
|
|
|
|
@property
|
|
def z_levels(self):
|
|
"""
|
|
The different levels in the Z-plane. Just a sequence from 0 to n.
|
|
|
|
:rtype: list
|
|
|
|
"""
|
|
return self._z_levels
|
|
|
|
@property
|
|
def total_images_per_channel(self):
|
|
return self._total_images_per_channel
|