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921 B
921 B
Tutorial
Installation
For now, the package is only available via GitHub. Install it using:
pip install --upgrade https://github.com/rbnvrw/nd2reader/tarball/master
If you don't already have the packages numpy, pims, six and xmltodict, they will be installed automatically if you use the setup.py script.
nd2reader is an order of magnitude faster in Python 3. I recommend using it unless you have no other choice. Python 2.7 and Python >= 3.4 are supported.
Opening ND2s
nd2reader follows the pims framework. To open a file and show the first frame:
from nd2reader import ND2Reader
import matplotlib.pyplot as plt
with ND2Reader('my_directory/example.nd2') as images:
plt.imshow(images[0])
After opening the file, all pims features are supported. Please refer to the pims documentation.